Plant FIBer expression Database

Lus10030000 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03910 664 / 0 unknown protein
AT2G36815 92 / 3e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027731
[exp]
816 / 0 AT1G03910 875 / 0.0 unknown protein
Lus10035558
[exp]
812 / 0 AT1G03910 870 / 0.0 unknown protein
Lus10027730
[exp]
320 / 3e-107 ND 328 / 7e-110
Lus10035559
[exp]
295 / 4e-98 ND 301 / 4e-100
Lus10021530
[exp]
270 / 4e-88 AT1G03910 253 / 2e-81 unknown protein
Lus10027605
[exp]
258 / 2e-83 AT1G03910 242 / 4e-77 unknown protein
Lus10035324
[exp]
128 / 2e-35 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G118700
[exp]
709 / 0 AT1G03910 849 / 0.0 unknown protein
Potri.001G242900
[exp]
237 / 2e-72 AT1G03910 250 / 1e-76 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10312 Cactin_mid Conserved mid region of cactin
PF09732 CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence
>Lus10030000 pacid=23159846 polypeptide=Lus10030000 locus=Lus10030000.g ID=Lus10030000.BGIv1.0 annot-version=v1.0
ATGGGGAGCAGAAGCAAGAGAGACGGCCGGAAAAGAAAACTGCAAGAAGATTCTGAGTCGGACTACTCTTCAAGAAGAAAGATTACTGATGATGAAATTG
CTGAGTACATGGTGAAGAAAGCTCAGCGGAAGGCTATCAAGGTTGCCAAGAAGTTGAAGGGGCAAATTACTGATGTTTCTTGGGGATATTCAAATGACTC
TAATCCTTTTGGTGATTCAAACTTGAATGAAAGTTTTGTATGGAGGAAGAAGATTGAGAAGGGTGTTTATCAAGGAGAGGATTTTTCGGTTAAGGCAGAG
ACAAAGAGACTAAAGGAATTGATGGCAGAGATTGGAAAGGTCAAAAAGAGAGGGGAGGAGAGGGCACTTCAAAAAGCACAGCACGAGCAAGAGATGGCAT
TGTTGGCCAGAGAAAGAGCACGCGCTGAATTCCAAGACTTGGAGAAGAAGGAGGACGAGTTCCATTACCAGCAAAGCAAGTTGAGGTCTGAGATCAGGCT
TCGTCAAGGGCGACTGAAACCGATCGATGTGTTGACAAAGCACTACTTGAATGTCTCCTCAGATGATGATGTCGACATGGAAATAAATGAACCCCCCTAT
ATGGTATTTTTGGGTTTGACAGTTAAAGAAATGGAAGAAGTCCATGATGATATCAAAATGCATCTGGAAATGGAGCGAAGGAAGACACAGACGCATGTAG
ATTATTGGGAGGCCCTTTTGGAGGTCTGCAACTGGCAATTATCACAAGCTCGGAAAAAAAGTGTCGAGTTTTTTCTTGCAGAAGAAAGGGGTATGCATGC
TGGCATCGAAGCAGATGTTCGTGATCTTTTGGAAGGTAAAACCTCCCAGGAGCTTGATGCATCGAAATTCAAGATTGAGGAGTTGTTAAGTTCTGGAGAA
GCAAGAGTTGTAGAGTATTGGCAAGCTGTTCTCAAGCGACTCCAGATTTACAAAGCAAAGGCTATTCTCAAGGAAATTCATGCGAAGAAGATGTTGCCAA
CGCATTTGAAACGTCTTGAACCGACTCCTGAAGTAGAAGATCTTGAACCTGTGGAGGAAACTCAAGAGGCAGAAGAGGAAGCTGGATCATTGTCCCCTGA
GCTGTTGCACGGAGATGAAGACGAAGAAGAAGAAGCCGTTGATCCCGAAGAGGATAAGGCTTTACTGGAGAAGAAGCGTTGGGTTGTGTTGGAAGAACAG
CAGAGGCGCATTATGGCATCAAAACCACCAGCGGACAAGTTTGAGATGAAGGCCATTAAAGCCATGGGAGTGATGGAGGAAGGCGATGCAGTGTTTGGGT
CGGGAGCTGAAGTGAATCTGGACTCTGCAGTTTACTACTGGTGGCACGACAAGTACAGACCGAGGAAACCAAACTACTCGAACCGAGTCCACACCGGTTA
CGAGTGGAACAAGTACAACCAGACCCACTACAACCATGATAACCCGCCACCGAAGATGGTTCAAGGATACAAGTTCAACATCTTCTACCCGGACCTCGTG
GACAAGACCAAGGCTCCGACATACACTTTTGATAAAGATGCGGGGAGCAGTGACGATGAGACCTGCATCATCAGGTTCCACGCGGGACCGCCTTACGAGG
ATATTGCTTTCCGGATTGTGAACGAGGAGTGGGAGTCCTCTCACAAGAAGGGGTTCAAGTGCACGTTCGAGCGCGGGATTCTGCATCTCTACTTCAACTT
CAAACGCCATCGCTACTGCCGGTGA
AA sequence
>Lus10030000 pacid=23159846 polypeptide=Lus10030000 locus=Lus10030000.g ID=Lus10030000.BGIv1.0 annot-version=v1.0
MGSRSKRDGRKRKLQEDSESDYSSRRKITDDEIAEYMVKKAQRKAIKVAKKLKGQITDVSWGYSNDSNPFGDSNLNESFVWRKKIEKGVYQGEDFSVKAE
TKRLKELMAEIGKVKKRGEERALQKAQHEQEMALLARERARAEFQDLEKKEDEFHYQQSKLRSEIRLRQGRLKPIDVLTKHYLNVSSDDDVDMEINEPPY
MVFLGLTVKEMEEVHDDIKMHLEMERRKTQTHVDYWEALLEVCNWQLSQARKKSVEFFLAEERGMHAGIEADVRDLLEGKTSQELDASKFKIEELLSSGE
ARVVEYWQAVLKRLQIYKAKAILKEIHAKKMLPTHLKRLEPTPEVEDLEPVEETQEAEEEAGSLSPELLHGDEDEEEEAVDPEEDKALLEKKRWVVLEEQ
QRRIMASKPPADKFEMKAIKAMGVMEEGDAVFGSGAEVNLDSAVYYWWHDKYRPRKPNYSNRVHTGYEWNKYNQTHYNHDNPPPKMVQGYKFNIFYPDLV
DKTKAPTYTFDKDAGSSDDETCIIRFHAGPPYEDIAFRIVNEEWESSHKKGFKCTFERGILHLYFNFKRHRYCR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G03910 unknown protein Lus10030000
[exp]
0 1
AT1G27340 Galactose oxidase/kelch repeat... Lus10003117
[exp]
2.4 0.8471
AT2G25430 epsin N-terminal homology (ENT... Lus10019402
[exp]
8.3 0.8208
AT4G38900 bZIP AtbZIP29 Basic-leucine zipper (bZIP) tr... Lus10042057
[exp]
13.3 0.7788
AT1G32220 NAD(P)-binding Rossmann-fold s... Lus10000057
[exp]
14.4 0.8146
AT4G26110 NAP1;1, ATNAP1;... ARABIDOPSIS THALIANA NUCLEOSOM... Lus10042106
[exp]
14.9 0.8242
AT1G33330 Class I peptide chain release ... Lus10032675
[exp]
17.0 0.7537
AT1G59950 NAD(P)-linked oxidoreductase s... Lus10039266
[exp]
18.9 0.8084
AT3G50120 Plant protein of unknown funct... Lus10019324
[exp]
19.8 0.7809
AT3G13180 NOL1/NOP2/sun family protein /... Lus10022523
[exp]
20.8 0.7962
AT4G34950 Major facilitator superfamily ... Lus10010805
[exp]
20.8 0.7520

Lus10030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.