Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26070 269 / 4e-91 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) AT3G51040 185 / 2e-58 RTH RTE1-homolog (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028350 [exp] 169 / 6e-52 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10041800 [exp] 168 / 9e-52 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10035322 [exp] 0 / 1 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G053900 [exp] 311 / 6e-108 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.006G229900 [exp] 305 / 3e-105 AT2G26070 360 / 3e-127 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.007G017900 [exp] 193 / 2e-61 AT3G51040 280 / 5e-96 RTE1-homolog (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [flax] [poplar] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Lus10030001 pacid=23159866 polypeptide=Lus10030001 locus=Lus10030001.g ID=Lus10030001.BGIv1.0 annot-version=v1.0 ATGGATATAAAAGGAGTTTATGATATTGAACAAATGAGCTTAAAATCGGGAATTGATCATGAGCTGTGGCCTCTTGAGGAGATTGATCCAAAGAAGGCAA GATTTCCATGCTGTCTGGTTTGGACTCCACTTCCTGTTGTATCATGGTTGGCGCCTTTTATGGGACATGTGGGCATTTGCAGAGAGGATGGAGCTATTTT GGACTTCTCTGGATCTAACCTTGTCTCTCTAGACAATTTTGCGTATGGTGCTGCTGCAAGATACCTTCAGCTAGATAGAGACCAGGCATGTTATGCTTTC TATCTCTCTCTCTCATCACTGTTCTTTTCCAACATGAACCGTGGTGGTCATACATGCAAGCACGGGTTTATGCACACGGAGAATGGGAGTGCAATCACTT GGGATGATGCCTTACATGCCAGTACACGTTACTACGAGACCAAGACATACAACATTTTCACTTGCAGTTGCCATTCTTTTGTTGCAAACTTCTTAAATCG GGTTTGTTACCGTGGATCGATGAACTGGAACATGTTGAACGTGGCAACCCTGGTTCTGTTAAAGGGTCATTGGATAGACTGGAAATCAGTGGTGAGATCT TTCCTGCCGTTCGCACTGGTGCTGTGTCTGGGTGTGTCTCTGAGTGTTAGTACTGATGTTGAACACAGTTGGAAGTTGGTTGTTTTGGAAGAGAATATCC CTGCTGCTATTGTTCTGTTTAATTGCAAATCGTACAGACTTGATAGTCTGGTAACTTGA
AA sequence Show only first row Show all	>Lus10030001 pacid=23159866 polypeptide=Lus10030001 locus=Lus10030001.g ID=Lus10030001.BGIv1.0 annot-version=v1.0 MDIKGVYDIEQMSLKSGIDHELWPLEEIDPKKARFPCCLVWTPLPVVSWLAPFMGHVGICREDGAILDFSGSNLVSLDNFAYGAAARYLQLDRDQACYAF YLSLSSLFFSNMNRGGHTCKHGFMHTENGSAITWDDALHASTRYYETKTYNIFTCSCHSFVANFLNRVCYRGSMNWNMLNVATLVLLKGHWIDWKSVVRS FLPFALVLCLGVSLSVSTDVEHSWKLVVLEENIPAAIVLFNCKSYRLDSLVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	2.2	0.9458
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	2.4	0.9437
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	3.5	0.9432
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	5.9	0.9424
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	5.9	0.9401
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	6.3	0.9442
AT1G32370		TTM1, TOM2B	tobamovirus multiplication 2B ...		Lus10040105 [exp]	7.3	0.9079
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10008507 [exp]	8.5	0.9329
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	8.9	0.9401
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	9.2	0.9401

Compare expression of checked genes

Lus10030001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.