Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15415 736 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 725 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 680 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 673 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 614 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 605 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G03470 596 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 582 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 527 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035321 [exp] 967 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 794 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 758 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 716 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 647 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 646 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 634 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 633 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10014619 [exp] 611 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157000 [exp] 791 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 774 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.017G070100 [exp] 723 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 721 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 718 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 689 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 689 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 612 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 598 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 586 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10030002 pacid=23159631 polypeptide=Lus10030002 locus=Lus10030002.g ID=Lus10030002.BGIv1.0 annot-version=v1.0 ATGATCAAGCAGATACTGGGGAAGCTACCTCGGAAGCCTTCGAAATCTTCGAGCAATGATTCGAGCAGTGATTTCAATGCTTATTCCTCTGTCAATTCTA GTTCTGCCGTAAACAGCAGCTCAAAGCCAGCTCCTTTGGCTTCTTCCAATGGTGTCATCAGTAAAGCGACACTGAATCGTGGCTCTTCCGGCGTTTACGA GCCATTGCCTAGTTTTAGGGATGTTCCTAGTTCAGAGAAGCAGAATCTCTTCATAAAAAAGTTGCAAATGTGCTGTGTTGTGTTTGATTTTAGTGATCCT AGCAAGCAGCTTAAGGAGAAAGACATAAAGCGGCAGACTTTACTTGAGCTTGTCGATTACGTTTCCTCTGTAACCATGAAGTTCAACGAGGTTGTGATGC AGGAGATGACCAAGATGGTAGCTTCCAATCTATTTCGGACTCTCCCCGCCACGAATCGTGAGAATAAGATCTTGGAAATGTATGATATGGAAGAGGAAGA GCCAGCAATGGATCCTGCTTGGCCTCATTTACAGATAGTTTATGAGTTCTTGCTCCGGTTCGTGGCCTCCACCGAGACTGATGCCAAGCTTGCTAAGAGG TACGTGGACCATTCGTTTGTGTTGAGGTTGCTTGACTTGTTTGATTCCGAGGATCAAAGGGAGAGGGAGTATTTAAAGACGATACTGCATCGTGTTTACG GGAAATTCATGGTGCATAGGCCGTTTATTAGGAAGGCTATCAATAACATCTTCTACCGATTCGTGTTCGAAACCGAGAGGCATAATGGCATTGCGGAGTT GCTTGAGATATTGGGCAGCATTATTAACGGGTTTGCCTTGCCGTTGAAGGAAGAGCACAAGTTGTTTCTAGTTCGTGCATTGATTCCGCTTCATAAGCCG AAATGTGTGTCCATGTACCATCAGCAATTGTCTTACTGCATAACTCAGTTTGTGGAGAAAGATGTCAAGCTTGCTGATACTGTGATTCGAGGTCTGTTGA AGTATTGGCCCATTACGAATAGTACGAAGGAAGGGATGTTCCTTGGTGAGTTGGAGGAAGTGCTGGAATCTACTCAGGCGGCGGAGTTTCAGCGCTGCAT GGTCCCGTTGTTCCGACGGATCGCTTGCTGTCTCAGCAGTTCGCATTTCCAGGTGGCTGAACGTGCGTTGTTTCTGTGGAACAACGATCACATTAGAAAC TTAATCTTGCAGAACCAGAGAGTGATCCTGCCAATAATCTTCCCAGCATTAGGAAAGAACGCCAGGGGTCACTGGAACCAAGCTGTTCAAAGCCTGACCC TAAACGTTAGAAAGATCTTCTCAGATTCCGACCCGGAATTCTTCGACGAATGCTTGGAGAAGTTCCAAGACGACGAGGCCAAGGAGATGGAGGCGCAGGA GAAACGACAAGTTATGTGGAAGCGATTGGAAGACGCTGCAGCCTCTAAAGATCCATCCTCACTCGTCTCCAGATTCGCAACCTCCGTTGCCATTCCCAGC GAAACAAGGAGTTCCAATGGCGGCTGA
AA sequence Show only first row Show all	>Lus10030002 pacid=23159631 polypeptide=Lus10030002 locus=Lus10030002.g ID=Lus10030002.BGIv1.0 annot-version=v1.0 MIKQILGKLPRKPSKSSSNDSSSDFNAYSSVNSSSAVNSSSKPAPLASSNGVISKATLNRGSSGVYEPLPSFRDVPSSEKQNLFIKKLQMCCVVFDFSDP SKQLKEKDIKRQTLLELVDYVSSVTMKFNEVVMQEMTKMVASNLFRTLPATNRENKILEMYDMEEEEPAMDPAWPHLQIVYEFLLRFVASTETDAKLAKR YVDHSFVLRLLDLFDSEDQREREYLKTILHRVYGKFMVHRPFIRKAINNIFYRFVFETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKP KCVSMYHQQLSYCITQFVEKDVKLADTVIRGLLKYWPITNSTKEGMFLGELEEVLESTQAAEFQRCMVPLFRRIACCLSSSHFQVAERALFLWNNDHIRN LILQNQRVILPIIFPALGKNARGHWNQAVQSLTLNVRKIFSDSDPEFFDECLEKFQDDEAKEMEAQEKRQVMWKRLEDAAASKDPSSLVSRFATSVAIPS ETRSSNGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	0	1
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	2.4	0.8363
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	2.4	0.8114
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	5.5	0.7893
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	5.6	0.7452
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	7.3	0.7886
					Lus10013070 [exp]	7.5	0.7617
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	9.3	0.8151
AT5G05230			RING/U-box superfamily protein...		Lus10034237 [exp]	9.4	0.7250
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	9.5	0.7660
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	10.2	0.7906

Compare expression of checked genes

Lus10030002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.