Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62360 283 / 8e-93 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 233 / 6e-73 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G23380 194 / 5e-59 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 189 / 2e-57 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT5G25220 88 / 6e-19 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 84 / 1e-17 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT5G11060 84 / 2e-17 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT1G62990 79 / 2e-16 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G75430 61 / 3e-10 HD BLH11 BEL1-like homeodomain 11 (.1) AT1G19700 60 / 2e-09 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028244 [exp] 208 / 2e-64 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10013037 [exp] 207 / 4e-64 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 207 / 1e-63 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 176 / 3e-51 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10007245 [exp] 156 / 2e-46 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10035320 [exp] 131 / 8e-38 AT1G62360 104 / 3e-28 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10042102 [exp] 111 / 3e-29 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10006291 [exp] 84 / 1e-17 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 81 / 2e-16 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G011101 [exp] 306 / 4e-102 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 306 / 9e-102 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 303 / 1e-100 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.002G113300 [exp] 220 / 2e-68 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.012G087100 [exp] 216 / 4e-67 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 209 / 6e-65 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 206 / 1e-63 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 206 / 4e-63 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 191 / 1e-57 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 182 / 2e-54 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain CL0123 [flax] [poplar] PF03791 [flax] [poplar] KNOX2 KNOX2 domain
Representative CDS sequence Show only first row Show all	>Lus10030003 pacid=23159752 polypeptide=Lus10030003 locus=Lus10030003.g ID=Lus10030003.BGIv1.0 annot-version=v1.0 ATGGAGAGTGGCCGTACGGCTGAAGTTTGTGGTGGTGGAATCCTAATGGGTTTGTCTAATCCTCATCGTAATGGGATTATGATGATTCAGCAGCAACAAC ACTCTTCTAATTCTACACCTTCTTCTTCACCCTCATCTTCTCATTCCTCCATGGACATGGTCACCAACAACAATCCTTTGCCATCTCCTTATTATTTCAT GGATTCCAACAACTTCATTAGCACCTCAATTTCTGCCTCCTTACCACCCACAGATCCTCATGAGACTCAGACTCTAACGCTTCCTAATAATACTAATCTT CTTCCTCTTCCTCCAACGACTAACACTAGTAGTAGTACTAGTAGTGGTGTGTCAATGAGGGCTAAGATCATGTCTCATCCCCACTTCCCCCGTCTCCTCT CCGCCTTCTCCAATTGCCAAAAGGAGGAGGCGTGCGGGGGGGATGCCCCCCCCGCCGCGGCCGCCATGATGTCGGGGGCTAGAACATCATCATTAGGAGA AGACCCAGCACTGGATCAGTTCATGGAAGCATACTGCGAGATGCTAACAAAGTACGAGCAAGAGCTCTCTAAGCCATTCAAAGAAGCCTTGATCTTCCTC TCCAGGATCGAGTCCCAGTTCCGTGCCCTAACCACCACTAATTCCTCATCCTCTCCTAATTACAACTCGGCTCAAGGTTCGGGCGACATGGCCAATGGTC GAAACGGGTCATCAGAGGAAGACATCGAAGCAATGGAGGCCACCTACATTGATCCACAGGCGGAGGACAAGGAGCTCAAAGTGCAGCTACTCCGTAGGTA CAGCGGATACCTAGGAAATCTGAAGCAAGAGTTCCTCAAGAAGAAGAAGAAAGGCAAGCTACCTAAGGAAGCGAGGCAGATGCTCCTCGAGTGGTGGAAC CGTCACTACAAGTGGCCTTACCCTTCGGAGACGCAGAAGGTGGCTCTGGCTGAGGCGACGGGGCTGGACCAGAAGCAGATAAACAACTGGTTCATTAACC AGAGGAAGAGGCACTGGAAGCCTACTGAGGACATGCAGTTTGTGGTGATGGATGCTGCTAACTACCCTCATTACTATCTCGAAAATGGTGGTAATTCATT TCCTTTGGATTTCAATTCATCATCTTCTCATCATCATAATCATCATCATCAACATCTTTGA
AA sequence Show only first row Show all	>Lus10030003 pacid=23159752 polypeptide=Lus10030003 locus=Lus10030003.g ID=Lus10030003.BGIv1.0 annot-version=v1.0 MESGRTAEVCGGGILMGLSNPHRNGIMMIQQQQHSSNSTPSSSPSSSHSSMDMVTNNNPLPSPYYFMDSNNFISTSISASLPPTDPHETQTLTLPNNTNL LPLPPTTNTSSSTSSGVSMRAKIMSHPHFPRLLSAFSNCQKEEACGGDAPPAAAAMMSGARTSSLGEDPALDQFMEAYCEMLTKYEQELSKPFKEALIFL SRIESQFRALTTTNSSSSPNYNSAQGSGDMANGRNGSSEEDIEAMEATYIDPQAEDKELKVQLLRRYSGYLGNLKQEFLKKKKKGKLPKEARQMLLEWWN RHYKWPYPSETQKVALAEATGLDQKQINNWFINQRKRHWKPTEDMQFVVMDAANYPHYYLENGGNSFPLDFNSSSSHHHNHHHQHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	1.0	0.9909
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	2.0	0.9378
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	2.0	0.9145
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	3.0	0.8963
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	3.0	0.9232
					Lus10010435 [exp]	5.5	0.8785
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	6.5	0.8988
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	6.6	0.8919
AT2G39870			unknown protein		Lus10040247 [exp]	6.7	0.9123
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	7.2	0.8864

Compare expression of checked genes

Lus10030003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.