Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15410 336 / 5e-112 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT4G04210 290 / 1e-95 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 282 / 9e-92 PUX3 plant UBX domain-containing protein 3 (.1) AT3G21660 144 / 3e-38 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035318 [exp] 623 / 0 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 360 / 2e-121 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 164 / 9e-15 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225800 [exp] 354 / 4e-119 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.014G157200 [exp] 314 / 2e-103 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1) Potri.011G011300 [exp] 308 / 1e-102 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 308 / 1e-102 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.004G004200 [exp] 303 / 8e-101 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G005000 [exp] 276 / 9e-91 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08059 [flax] [poplar] SEP SEP domain CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10030005 pacid=23159855 polypeptide=Lus10030005 locus=Lus10030005.g ID=Lus10030005.BGIv1.0 annot-version=v1.0 ATGGAAGCCGCTGGCGGGAAGCTCGATCTCAACGACACGGACAACTCCGCGCTGGTCGATTCGTTCTGCGAGATCACCTCCTCCACCAGAGAAGAGGCCG CTTTCTACTTGGAGAGCCACCAGTGGGATCTCGACTCCGCCGTCTCGACTTTCCTCGACAACGATAACGCCTCCGCCGCTGTAGTGGCGGCGGCGGCTGA TTCCTCTGCTGCTGCTCGTGGTCCTGTTCGTCCGTCTCGCGCGGCAGTCGACACACCGTCTCCGACGGATTCTCCCGGTGAATCTCTGTCCCCTGATTAC TCTCCCTCGCAGTCTCCTTCTAGGTCTAGGTCGCGATCGTTGTCTCCCGCTCCCGCGACGGTGTCTAGGGTTTCTAGGTTACCGTACAGGCTGAGATCGA GGGGGGCGGATGATGATAACAAGAAGAATAAGAAGCCAAGGACTGATGATGGTAGTGGTACCAGTAGGAGTGGGAATCGCCGTGGAATTACGACGTTATC TGATCTCAATCGAGCGCCCGGTGGTTCTGATACCGACGATGAAGACGACGACGAGCCGCAGGAGTATTATACTGGTGGCCAGAAGAGCGGAATGCTGGTC CAAGATCCTAAGAAGAAGTTCGACGCAGATGCCATCTTCGATCAGGCTAGAAATTCAGGAGCTGTGCATAGGCCTGAGGATTCCGCTAGGGCTTCTTCAG CTTCAAGGAGTTTTGCTGGAACTGGGAGATTACTCTCTGGAGAGACGGTTCCTGCTTCGTCACAGCCTGCTGAATTTGTCAATCATACAATCACCCTGTG GAGGAATGGCTTCACAGTGAATGATGGGCCTTTGAGGAGGTTGAATGATCCTGCTAATGCAGAGTTCCTGGAGAGCGTTGAGAAGTCCGAGTGTCCAACC GAGCTCGAACCAGAAGACAGGAGAACCCAAGTCCATCTCAACCTCGTGCGTCGCGATGAAAACTACACAAAGCAGGAGCCACCGAAGAAGAAACCGGCGT TCAAAGGCGTGGGAAGAACATTAGCGGATGATGCATCAGCCTCCGAGCCACAACCCGCTCCTGCTCCCTTGACGACTGCCCCGGTACCTTCATCCGGTCT GACCGTAGATTCTTTATCGCCAACCACGTCAATCCAGCTCCGGCTGGCAGATGGTACACGGATGGTGTCCCGCTTCAACCTGCACCACACCATTAGAGAT GTCCGAGGATTCATCATGGCTTCGAGACCCGGTGAAGCACAGGATTTCCAGCTGCAGACGATGGGGTTCCCTCCGAAACAGCTCACCGATCCGGATCAGA CGATACAGGATGCTGGGATTGCGAATTCTGTCGTGATCCAGAAGCTCTAG
AA sequence Show only first row Show all	>Lus10030005 pacid=23159855 polypeptide=Lus10030005 locus=Lus10030005.g ID=Lus10030005.BGIv1.0 annot-version=v1.0 MEAAGGKLDLNDTDNSALVDSFCEITSSTREEAAFYLESHQWDLDSAVSTFLDNDNASAAVVAAAADSSAAARGPVRPSRAAVDTPSPTDSPGESLSPDY SPSQSPSRSRSRSLSPAPATVSRVSRLPYRLRSRGADDDNKKNKKPRTDDGSGTSRSGNRRGITTLSDLNRAPGGSDTDDEDDDEPQEYYTGGQKSGMLV QDPKKKFDADAIFDQARNSGAVHRPEDSARASSASRSFAGTGRLLSGETVPASSQPAEFVNHTITLWRNGFTVNDGPLRRLNDPANAEFLESVEKSECPT ELEPEDRRTQVHLNLVRRDENYTKQEPPKKKPAFKGVGRTLADDASASEPQPAPAPLTTAPVPSSGLTVDSLSPTTSIQLRLADGTRMVSRFNLHHTIRD VRGFIMASRPGEAQDFQLQTMGFPPKQLTDPDQTIQDAGIANSVVIQKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	0	1
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	2.2	0.8880
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	3.7	0.8859
AT5G66820			unknown protein		Lus10009344 [exp]	7.4	0.8581
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	8.1	0.8774
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	8.9	0.8605
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	10.6	0.8696
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	11.0	0.8637
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	11.2	0.8744
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	14.2	0.8793
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	14.9	0.8550

Compare expression of checked genes

Lus10030005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.