Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21670 637 / 0 Major facilitator superfamily protein (.1) AT2G26690 416 / 2e-139 Major facilitator superfamily protein (.1) AT1G12110 412 / 1e-137 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G54140 326 / 2e-104 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 326 / 3e-104 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 306 / 6e-97 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 300 / 4e-94 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G33440 299 / 1e-93 Major facilitator superfamily protein (.1) AT1G59740 295 / 2e-92 Major facilitator superfamily protein (.1) AT1G68570 275 / 1e-84 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035317 [exp] 885 / 0 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 442 / 3e-149 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 412 / 1e-137 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10039782 [exp] 406 / 4e-135 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 402 / 1e-133 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 402 / 2e-133 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 333 / 1e-106 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 332 / 2e-106 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 332 / 3e-106 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157500 [exp] 691 / 0 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.002G225500 [exp] 662 / 0 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 439 / 3e-148 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.010G100200 [exp] 339 / 3e-109 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.005G233500 [exp] 329 / 3e-105 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 322 / 7e-103 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 322 / 1e-102 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 315 / 2e-100 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 313 / 2e-99 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 308 / 4e-97 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030006 pacid=23159838 polypeptide=Lus10030006 locus=Lus10030006.g ID=Lus10030006.BGIv1.0 annot-version=v1.0 ATGGTTTTGGTGGCAGAGGACGGAGATAGTGGTGGTGGAGATGCAGCAGTGGATTACAGAGGAAACCCAGCTGACAAGTCCAAGACTGGTGGTTGGCTTG CTGCTGCCTTGATTCTAGGAACTGAGCTCTCAGAGAGGATATGTGTGATGGGGATATCAATGAACCTTGTGACATACTTGGTTGCGGATTTGCACATCCC AGCGGCGAAATCGGCAACAATTGTGACCAACTTCATGGGGACTCTCAACTTGCTTGGCCTCCTTGGTGGGTTCTTGGCTGATGCCAAGCTTGGCCGTTAC TTGACTGTTGCCGTCTTTGCCTCCATCACAGCTTTGGGAGTCACACTCCTAACACTAGCAACAAGCATCCCAACAATGAGGCCGCCGCAATGCGACAACT CCCGCCGGCATCCCTCCCTATGCATCGAAGCCAACGGAAAGCAGCTGGCCCTCCTCTACGCGGCGCTCTACACCACCGCCTTGGGCGGCGGAGGTATAAA GTCCAACGTATCCGGTTTTGGGTCAGACCAGTTCGACTCGTCCGACCCGAAAGAGGAGAAGTCGATGGTGTTCTTCTTCAACAGGTTCTACTTCTGCATA AGCCTCGGCTCGCTCTTCGCCGTGATCGTGCTCGTCTACATCCAGGACAACATAGGGCGAGGGTGGGGGTACGGGATCTCGGCTGCCACGATGGTGGTGG CGGTGGTGGTTCTTGTCGTCGGTACGAGGTTGTACCGGTACAAGAAGCCAAAGGGGAGTCCCGTGACGGTTATCTCGAGAGTTGTGTTCTTGGCTTGGAA GAAGAGGAAGGTTGATTACCCTAAGGATGTGAGTGAGTTGAATGGGTACCACGGATCCAGAGTTCAGCATACTGACAAGTTCAAGTGTCTAGACAAGGCA GCGATAGTAGACGAGACCTCAGGCGACAACAAGAACGACCCGTGGGTAGTCTCGCAACTAACAGAGGTCGAAGAGCTCAAAATGGTGTTGAGACTCATCC CAATCTGGTCCACCTGCATCCTCTTCTGGACAGTCTACTCTCAAATGACAACCTTTACGGTCGAACAAGCCACTGCCATGAACCAAAAACTCGGCTCCAT AACGATCCCTGCGGGCTCCTTCTCCACAGTCTTGTTCATCACAATCCTCCTCTTCACCTCCTTGAATGAGAAGCTCTTCGTCCCCATTGGGCGGAAGCTC ACTCGTAACCCGCAGGGGATAACCAGCCTTCAGAGGATCGGGATCGGCCTCCTGTTCTCGATCGTCGCCATGGTTGCAGCTGCTGTGATCGAGAAATCGC GGAGGCACAAAGCGAACGAGGATGGCGTTAAAATCAGCGCGTTCTGGCTGGTACCGCAATTCTTCCTGGTGGGTGCGGGCGAGGCGTTCGCCTACGTGGG GCAGCTGGAGTTCTTCATACGGGAGGCCCCGGAGAAGATGAAGTCGATGAGTACGGGGCTCTTTCTTAGCACCATCTCGATGGGGTTCTTCGTCAGTAGC TTGCTGGTCTCGGTCGTCGACAAGGTGACTCATAAAGTCTGGCTCAGGAGCAATTTGAACAGCGGGAAGCTGAACAATTTCTACTGGCTGCTTGCTGCTT TGGGTCTGGTGAACTTTGTGGTGTTCTTGGTTGTTGCTAGCCGGCATCAGTATAAGGTGAGGAATGGTGGTGGAGAAATTGAGATTAAGGATGATGTTGC TACTATGGTTGTAGAAATGGAGTAG
AA sequence Show only first row Show all	>Lus10030006 pacid=23159838 polypeptide=Lus10030006 locus=Lus10030006.g ID=Lus10030006.BGIv1.0 annot-version=v1.0 MVLVAEDGDSGGGDAAVDYRGNPADKSKTGGWLAAALILGTELSERICVMGISMNLVTYLVADLHIPAAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY LTVAVFASITALGVTLLTLATSIPTMRPPQCDNSRRHPSLCIEANGKQLALLYAALYTTALGGGGIKSNVSGFGSDQFDSSDPKEEKSMVFFFNRFYFCI SLGSLFAVIVLVYIQDNIGRGWGYGISAATMVVAVVVLVVGTRLYRYKKPKGSPVTVISRVVFLAWKKRKVDYPKDVSELNGYHGSRVQHTDKFKCLDKA AIVDETSGDNKNDPWVVSQLTEVEELKMVLRLIPIWSTCILFWTVYSQMTTFTVEQATAMNQKLGSITIPAGSFSTVLFITILLFTSLNEKLFVPIGRKL TRNPQGITSLQRIGIGLLFSIVAMVAAAVIEKSRRHKANEDGVKISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPEKMKSMSTGLFLSTISMGFFVSS LLVSVVDKVTHKVWLRSNLNSGKLNNFYWLLAALGLVNFVVFLVVASRHQYKVRNGGGEIEIKDDVATMVVEME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	2.4	0.9015
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	2.6	0.9081
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	3.0	0.9001
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	6.7	0.8619
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	6.9	0.8855
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	7.1	0.8944
AT4G02920			unknown protein		Lus10042685 [exp]	7.5	0.8953
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	8.0	0.8818
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	8.8	0.8705
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	9.2	0.8605

Compare expression of checked genes

Lus10030006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.