Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 312 / 1e-104 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 243 / 1e-76 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 239 / 2e-75 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G44550 215 / 2e-67 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 207 / 2e-64 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT1G48930 209 / 1e-63 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44570 198 / 9e-61 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 188 / 6e-57 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT1G19940 180 / 2e-53 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G70710 171 / 2e-50 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035316 [exp] 462 / 1e-163 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 278 / 5e-91 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10001833 [exp] 241 / 4e-76 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 235 / 2e-73 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 231 / 5e-72 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 220 / 6e-68 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10033957 [exp] 211 / 3e-65 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10034515 [exp] 183 / 2e-54 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10017402 [exp] 184 / 3e-54 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157600 [exp] 341 / 9e-116 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 287 / 1e-94 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 248 / 2e-78 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 246 / 6e-78 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.002G225400 [exp] 215 / 2e-71 AT2G32990 202 / 3e-63 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 217 / 9e-67 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.002G023900 [exp] 182 / 3e-54 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.015G127900 [exp] 180 / 8e-54 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.005G237700 [exp] 178 / 1e-52 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G098800 [exp] 176 / 7e-52 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10030007 pacid=23159664 polypeptide=Lus10030007 locus=Lus10030007.g ID=Lus10030007.BGIv1.0 annot-version=v1.0 ATGACGGAGTTCAGCTGGGATGTTAAGTATGCTGGCATTCAAATCATGGCTTCAAAGTTACTTACAGAGGCAAAGCACAAGCCACACAGCGAAATACTCC ACCAATACAAATCAAAAGCAGAGTTCTACCTATGCTCACTCCTCAACAAGAACAACTCCACAACATCCAACGTAATCCACACCCCAGGAGGACTCATCTA CATTCGAGAATGGAACAACATGCAGCACGTATCAACAGCATCTTTCCTCATGACATACTACTCTGACTTCCTCCTTGAATCGGGCCAGCTCACCTTCGAC TGCCACCTAGGATCCGTGACCCACCACGAACTCCTGTCGTTCACCAAGTCGCAAGTGGACTACATCCTTGGCTCGAACCCGATGAACATGAGCTACCTTG TAGGGTACGGCTCGAACTACCCTAGGAGGGTCCACCATCGTGGGGCTTCGATCGTGTCCTATAGGGAGCATAGAGGGTTCATCGGGTGCACCCAGGGTTA CGATGATTGGTACGGTAAGGACGAGCCCAACCCTAACTTGCTCGTTGGGGCTCTGGTCGGTGGTCCGGATTTCGAGGATAAGTTTGTTGATAGTAGGGAT AATTTCATGCAGACCGAGGCTTGTACTTATAATACTGCTCCCTTGGTTGGTGTTTTTGCTAAGTTTCTAGGGTTGGCTGAGGATGAGTTGGATGATGACC AAATGTTGGTTGCTTCCATATAG
AA sequence Show only first row Show all	>Lus10030007 pacid=23159664 polypeptide=Lus10030007 locus=Lus10030007.g ID=Lus10030007.BGIv1.0 annot-version=v1.0 MTEFSWDVKYAGIQIMASKLLTEAKHKPHSEILHQYKSKAEFYLCSLLNKNNSTTSNVIHTPGGLIYIREWNNMQHVSTASFLMTYYSDFLLESGQLTFD CHLGSVTHHELLSFTKSQVDYILGSNPMNMSYLVGYGSNYPRRVHHRGASIVSYREHRGFIGCTQGYDDWYGKDEPNPNLLVGALVGGPDFEDKFVDSRD NFMQTEACTYNTAPLVGVFAKFLGLAEDELDDDQMLVASI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	0	1
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	1.0	0.9575
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	2.0	0.9304
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	3.7	0.8857
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	4.2	0.9216
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10024690 [exp]	5.8	0.8351
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	6.0	0.8994
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	6.3	0.8971
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	10.1	0.8861
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	11.0	0.8786
AT3G63430			unknown protein		Lus10003090 [exp]	13.0	0.8836

Compare expression of checked genes

Lus10030007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.