Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 389 / 3e-134 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 329 / 2e-109 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 324 / 2e-107 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 263 / 6e-84 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G70710 242 / 2e-77 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT2G44560 241 / 6e-77 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT4G02290 239 / 5e-76 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT2G44550 239 / 7e-76 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT1G02800 239 / 8e-76 ATCEL2 cellulase 2 (.1) AT1G23210 236 / 5e-75 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035316 [exp] 422 / 4e-147 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 348 / 3e-118 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10033957 [exp] 332 / 3e-112 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 331 / 2e-110 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 327 / 1e-108 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 323 / 3e-107 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 281 / 5e-91 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 278 / 5e-90 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10013418 [exp] 256 / 5e-83 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225200 [exp] 389 / 3e-137 AT2G32990 465 / 2e-163 glycosyl hydrolase 9B8 (.1) Potri.014G157600 [exp] 391 / 7e-135 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 376 / 4e-129 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 322 / 1e-106 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 318 / 2e-105 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 284 / 5e-92 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.010G109200 [exp] 239 / 4e-76 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 239 / 6e-76 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 238 / 2e-75 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 238 / 4e-75 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10030008 pacid=23159869 polypeptide=Lus10030008 locus=Lus10030008.g ID=Lus10030008.BGIv1.0 annot-version=v1.0 ATGGACAACCACAGAAGAGCTGTATCACTTTTCATCATCCTCCTCACAATCCCCTCCCCAATCTCCTCATCTTTCGACTACGCCGACGCATTGTCCAAGA GCCTCCTCTACTTCGAATCCCAGCGCTCCGGCCGCCTCCCGTACAACCAGCGTGTCTCCTGGCGCGACCATTCCGGCCTCACCGACGGCCTCGAACAAGG CGTGGATTTGGTCGGTGGGTATTACGACGCCGGCGACCAGGTGAAATTCGGCCTCCCGATGGCCTTCACCGTGACAATGCTGTCGTGGGGAATGTTGGAA TCCGGAGAACAGATCGCCGCCGCCGGCGAATTGCAGCATGCTCTTGAAGCAATCAAATGGGGCACTGATTACTTCATCAAAGCTCACACCAGCCCTAACG TTCTCTGGGCAGAGGTGGGAGATGGAGACACAGACCATTACTGCTGGCAGAGGCCGGAGGACATGACTACCTCACGGCGAGCCTACAGAATCGACGAGAA CAACCCAGGATCGGATCTCGCCGGCGAAACAGCAGCCGCGATGGCCGCCGCGTCGATGGTGTTCAGGAAACCCAACCCGCATTACTCCCACTTGCTTTTA CACCATGCCCAGCAGTTGTTCGAGTTCGGCGACAAATTCAGGGGTAAATACGACTCGAGTGTGGGGGTAGTGAAGGGATACTACGCGTCGGTGAGCGGGT TCATGGACGAGCTACTGTGGGCGGTTCATGGACGAGTTACTGTGGGGGGCAATGTGGCTGTACAGAGCGACCGACAAGGAAGAGTATTTGGAGTATGTGA TTAA
AA sequence Show only first row Show all	>Lus10030008 pacid=23159869 polypeptide=Lus10030008 locus=Lus10030008.g ID=Lus10030008.BGIv1.0 annot-version=v1.0 MDNHRRAVSLFIILLTIPSPISSSFDYADALSKSLLYFESQRSGRLPYNQRVSWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFTVTMLSWGMLE SGEQIAAAGELQHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAYRIDENNPGSDLAGETAAAMAAASMVFRKPNPHYSHLLL HHAQQLFEFGDKFRGKYDSSVGVVKGYYASVSGFMDELLWAVHGRVTVGGNVAVQSDRQGRVFGVCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	0	1
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	1.0	0.9575
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	1.4	0.9501
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	1.7	0.9199
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	3.5	0.9180
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	5.5	0.9043
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10035316 [exp]	5.7	0.8364
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	5.9	0.9135
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	6.0	0.8975
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	6.9	0.9024
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	8.4	0.9036

Compare expression of checked genes

Lus10030008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.