Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036533 [exp] 0 / 1 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10041395 [exp] 0 / 1 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072900 [exp] 0 / 1 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 0 / 1 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030009 pacid=23159648 polypeptide=Lus10030009 locus=Lus10030009.g ID=Lus10030009.BGIv1.0 annot-version=v1.0 ATGCTTCTTTCTCCATCTCAGCTTCGGTTGCGTCTACAAAGCCCAGCAATTTCGGATTTCAACGCCAAGATCGACGATTTCAGCCTCGCTAGATTGAAGA TGGAGGGAATCGCCGAGTGTGTAGCGGGAGAAGACCACATATCTATTCTGGAAGAGGCGGCGGAGAGTATTGCAGCGAAGACTGAATACGAAGACAGCTC CGCCGCGGCAGCAGCAGGTGTCGATCTGTCGCCGGTGAGTTTTTCCAGTAAGGTCTTGGATTCAGATGCTTCGCCGCAGGCGGCGACAAGGAGAGTTTCG GAGGCGGATCGGGCGAGTATGGAGAGATTTGGGGAATGGAGGAGGAAAGAAAGGTGGATCGAGAAGGGATTGGTGGTCGAAACAGGACAATGGAGTAGAA TCGGAGTCTGGAAGAGTGAAGGATTATGTAATGGAATGGATTGGGAGTGA
AA sequence Show only first row Show all	>Lus10030009 pacid=23159648 polypeptide=Lus10030009 locus=Lus10030009.g ID=Lus10030009.BGIv1.0 annot-version=v1.0 MLLSPSQLRLRLQSPAISDFNAKIDDFSLARLKMEGIAECVAGEDHISILEEAAESIAAKTEYEDSSAAAAAGVDLSPVSFSSKVLDSDASPQAATRRVS EADRASMERFGEWRRKERWIEKGLVVETGQWSRIGVWKSEGLCNGMDWE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25390			Protein kinase superfamily pro...		Lus10030009 [exp]	0	1
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	7.0	0.6427
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	32.5	0.5855
AT4G39050			Kinesin motor family protein (...		Lus10017906 [exp]	46.6	0.5459
					Lus10025147 [exp]	56.0	0.5444
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	58.8	0.5675
AT1G69550			disease resistance protein (TI...		Lus10041559 [exp]	97.1	0.4557
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024299 [exp]	111.1	0.5058
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	140.4	0.5032
AT5G20810			SAUR-like auxin-responsive pro...		Lus10034888 [exp]	193.5	0.4460
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	240.6	0.4603

Compare expression of checked genes

Lus10030009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.