Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05030 645 / 0 Major facilitator superfamily protein (.1) AT1G67300 352 / 4e-116 Major facilitator superfamily protein (.1.2) AT5G16150 344 / 2e-112 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G79820 327 / 1e-106 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT3G18830 182 / 9e-51 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 180 / 3e-50 AtPLT4 Major facilitator superfamily protein (.1) AT4G36670 160 / 2e-43 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT5G59250 162 / 3e-43 Major facilitator superfamily protein (.1) AT1G19450 157 / 5e-42 Major facilitator superfamily protein (.1) AT2G43330 154 / 7e-41 ATINT1 inositol transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035315 [exp] 950 / 0 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10033568 [exp] 348 / 1e-113 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 346 / 5e-113 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 345 / 1e-112 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 332 / 4e-107 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10034930 [exp] 306 / 9e-98 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10018581 [exp] 184 / 1e-51 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10035255 [exp] 184 / 1e-51 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035862 [exp] 177 / 2e-51 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060800 [exp] 690 / 0 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 348 / 8e-114 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.018G083200 [exp] 339 / 4e-111 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G185300 [exp] 317 / 1e-102 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.017G116400 [exp] 272 / 4e-87 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.013G135200 [exp] 177 / 4e-49 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 175 / 3e-48 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 163 / 3e-44 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 161 / 2e-43 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G027900 [exp] 160 / 5e-43 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10030010 pacid=23159652 polypeptide=Lus10030010 locus=Lus10030010.g ID=Lus10030010.BGIv1.0 annot-version=v1.0 ATGTGGATGACTACTATACTATCTCCCCCGCTTCCTTTCCCGGGGATCGTCGCATCGACGCAGCTCCGTAGACGGACCCACGTCCGTTTTCGAATCTCGT TATCCCCGACGCCGTTCAGAGTTTCAGCGGTGAAGTACGGTGATAGACAAAATCCAGAAATTGAGAAGGTATCGACGGAGAGAAATAGTGGAGAGACTTC GAGTCCGAATCCTGGATGGATTCGTGCTTTCCCTCATGTGCTCACTGCTTCAATGTCCAATTTCCTGTTTGGCTATCAGATTGGAGTAATGAATGGACCT ATTGTCTCTGTTGCTCGGGAGCTGGGGTTTGAAGGGAATCCGATCCTCGAGGGGCTTGTTGTGAGCATATTTATAGCTGGTGCGTTTTTTGGAAGCATTG GATGCGGTTCACTGGCTGATAAACTTGGATGTCGGCGGACATTTCAGGTTGCTACAGTACCATTGATTCTCGGGGCAATGATAAGTGCACAAGCACACTC ATTGGAAGAAATAATCGAAGGAAGGTTTCTGGTTGGCCTTGGGATCGGGGTGAACACAGTTCTTGTTCCAATATATATATCGGAGGTTTCTCCCACACAA TATAGAGGTTCGCTGGGGACCTTCTCTCAGATTGGCACATGCTCCGGCATCATTGCAGCTTTGTTACTTGGAATTCCTTCAGATAGTGATCCCCACTGGT GGAGGACGATGTTGTCTGCTGCTAGTGTTCCTGGAATTTTGCTTGCGTTGGGTATGCAGTTTGCTGTAGACAGCCCTCGTTGGCTGTATAAAGCTGGGAA AATAGACGATGCAAAAGAAGTTATCTCTAACCTTTGGGGACCAAGTGAAGTTGACAAAGCAATTGAAGAAATCCAATCAGTGGTTAAGAGTGATAGCAGT GATGCGGATGGTACATGGTTGGAACTACTGGAGCAACCACACTCTCGAGGTTGTGTCAAGTTTGCCGGTATAAATGGAGTCCTTTACTTCTCTTCCCTGA CATTCAAGGATGTCGGTATAACAAGTAGCGTCTTACCTAGCATATTCATTGGAATCATCAACTTTGCAGGTGCACTTTCTGCTCTATACTTGATTGATAA GGAAGGAAGGAAGAAGCTATTAATCGGCAGTTACATTGGAATGGCACTCTCGATGTTTCTCGTAACAGGCTCTATAACTCTGCCACTAGACGAAGAAGTT GGCCACATCACGTCCATATTAGGAACTCTCATGTACATATACACCTTTGCGATCGGAGCCGGTCCAGTTACCGGTATGATCATACCAGAGCTCAGCAGCT CCAGGACTCGCGGGAAGATCATGGGATTCAGTCTATCAGTTCACTGGGTATTAGTTGAAATTGGAAAACTTGAACAAGAAGCCCATATTATTCAGGTCTG CAACTTCGTCGTGGGTCTGTTCTTTCTGGACATGGTGGAGACCTTTGGGGTTGCACCCGTTTATACTGCATTCGGTGCTGTATCGCTCTTATCGGCGGTG TTCGCGTACTACTTCACCGTCGAAACTAAAGGCCGGTCCCTGGAGGAGATTGAGATGTCCCTGAAAAGGAAAGGCTAG
AA sequence Show only first row Show all	>Lus10030010 pacid=23159652 polypeptide=Lus10030010 locus=Lus10030010.g ID=Lus10030010.BGIv1.0 annot-version=v1.0 MWMTTILSPPLPFPGIVASTQLRRRTHVRFRISLSPTPFRVSAVKYGDRQNPEIEKVSTERNSGETSSPNPGWIRAFPHVLTASMSNFLFGYQIGVMNGP IVSVARELGFEGNPILEGLVVSIFIAGAFFGSIGCGSLADKLGCRRTFQVATVPLILGAMISAQAHSLEEIIEGRFLVGLGIGVNTVLVPIYISEVSPTQ YRGSLGTFSQIGTCSGIIAALLLGIPSDSDPHWWRTMLSAASVPGILLALGMQFAVDSPRWLYKAGKIDDAKEVISNLWGPSEVDKAIEEIQSVVKSDSS DADGTWLELLEQPHSRGCVKFAGINGVLYFSSLTFKDVGITSSVLPSIFIGIINFAGALSALYLIDKEGRKKLLIGSYIGMALSMFLVTGSITLPLDEEV GHITSILGTLMYIYTFAIGAGPVTGMIIPELSSSRTRGKIMGFSLSVHWVLVEIGKLEQEAHIIQVCNFVVGLFFLDMVETFGVAPVYTAFGAVSLLSAV FAYYFTVETKGRSLEEIEMSLKRKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	3.2	0.9469
AT1G55270			Galactose oxidase/kelch repeat...		Lus10030072 [exp]	3.3	0.9046
AT3G05390			unknown protein		Lus10004494 [exp]	4.0	0.9368
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	4.7	0.9376
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	7.3	0.9295
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	8.1	0.9323
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	8.1	0.9368
					Lus10030676 [exp]	8.3	0.8964
					Lus10005096 [exp]	10.4	0.9130
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10041756 [exp]	11.0	0.8472

Compare expression of checked genes

Lus10030010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.