Plant FIBer expression Database

Lus10030011 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29070 264 / 5e-89 Phospholipase A2 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035314
[exp]
442 / 7e-160 AT4G29070 266 / 3e-90 Phospholipase A2 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G275300
[exp]
308 / 1e-106 AT4G29070 290 / 4e-99 Phospholipase A2 family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10030011 pacid=23159712 polypeptide=Lus10030011 locus=Lus10030011.g ID=Lus10030011.BGIv1.0 annot-version=v1.0
ATGCATGCAGACAAGGCCACTGAATCAAACCTCGACTCGATCGCTGTTACGTCGTCCAATGCCGTGACAGAGCAGCGAAAGAGCGACGGTGATTTCGGTT
TCAGGCTCTGGGGATGGTCTCTCTTTTCGATCATACCTTTAGCCATCACTTCCGATCAAAAGATGGAAAGACCAACTACCATAAACAGAAAGCTGAAGAG
GCGTGGCGGCCAGTATCCTACTGATCAAGTTGTTTACAGTGGTGGTGGCGGTGGTGGTATTAGGGGTTGTAATAGTAACCCTCTGCGATTTAGACCTTAT
GTATCCAAAGTTCCATGGCATACAGGGCCAAGAGCCTTCCTTTCTCAGCTTTTTCCCCGCTATGGGCACTACTGTGGCCCTAACTGGTCCAGCGGGAAAG
ACCAGGGCTCTCTCCTATGGGACAAGCGGCCAATTGATTGGTTGGATTATTGCTGCTACTGCCATGATATGGGTTACGACACTCACGATCAAGCTGAGCT
TTTGAAGGCGGATTTGAAGTTTCTGGAATGCTTGGAGAGGCCTTATATGGTGACCAGAGGGGACTCTCATGTCGCTCATATATACAAGACCATGTCCATC
ACAGGATTGAAGAATATACTGATACCGTACAGAACACACGTTGTGAAGCTGCAATCCGGGCTTCCTGAGATAAATTTTGGATGGTTGAGCAATGTGAGGT
TTAGAGGGTGGAAATTCTGCAGAATACAAGGTAGCCAGCAGTAG
AA sequence
>Lus10030011 pacid=23159712 polypeptide=Lus10030011 locus=Lus10030011.g ID=Lus10030011.BGIv1.0 annot-version=v1.0
MHADKATESNLDSIAVTSSNAVTEQRKSDGDFGFRLWGWSLFSIIPLAITSDQKMERPTTINRKLKRRGGQYPTDQVVYSGGGGGGIRGCNSNPLRFRPY
VSKVPWHTGPRAFLSQLFPRYGHYCGPNWSSGKDQGSLLWDKRPIDWLDYCCYCHDMGYDTHDQAELLKADLKFLECLERPYMVTRGDSHVAHIYKTMSI
TGLKNILIPYRTHVVKLQSGLPEINFGWLSNVRFRGWKFCRIQGSQQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G29070 Phospholipase A2 family protei... Lus10030011
[exp]
0 1
AT1G76570 Chlorophyll A-B binding family... Lus10015235
[exp]
5.6 0.8067
AT5G64460 Phosphoglycerate mutase family... Lus10020467
[exp]
6.0 0.7576
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Lus10007945
[exp]
6.9 0.7638
AT1G48320 Thioesterase superfamily prote... Lus10006220
[exp]
7.4 0.7587
AT4G29070 Phospholipase A2 family protei... Lus10035314
[exp]
7.5 0.7853
AT4G25720 ATQC, QCT GLUTAMINYL CYCLOTRANSFERASE, A... Lus10038844
[exp]
9.4 0.6955
AT1G76570 Chlorophyll A-B binding family... Lus10005421
[exp]
13.7 0.7432
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10041561
[exp]
14.0 0.7576
AT1G13510 Protein of unknown function (D... Lus10031915
[exp]
15.9 0.6859
AT5G67300 MYB ATMYB44, AtMYBr... ARABIDOPSIS THALIANA MYB DOMAI... Lus10019314
[exp]
20.1 0.7129

Lus10030011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.