Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05755 0 / 1 Nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035313 [exp] 555 / 0 AT2G05755 447 / 1e-156 Nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157700 [exp] 261 / 2e-83 AT2G05755 462 / 1e-162 Nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10030012 pacid=23159739 polypeptide=Lus10030012 locus=Lus10030012.g ID=Lus10030012.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCCTCTACGGAGATCAGCGACGGGGATAACGCTGTGGAGCTGGTCGTCTGCGACGTGCCTGCATTGTCTTCTACCGAATCTAACGGCGACG CAGCTGGCGATGCTGCTGAATCGGAGGAGATTGCTCCTCTGTTGAAGCAGCAGGCGGAACGGCCCAAGATCAATATCTTCTCCGTCTCTTACTCTCGCCG GAAACCTAGGGAACATGCGATCAAGCTACCTGAATCCGATGCTCAAGTATCACAATTGATTCTATGGCTGTGGGGTGGATCAAGATACTCGGGTATGCTG TGTGTAGCTGTATCGTCGGCCATCTACTTCTTTATGGAGGTTCTTTCTGATGTTTTTTCTGGTAAGGGGGTGTTTCCTTTTTCAGGAACAGAACTTCATA ACTTAGATTTTTATAATGGCAGCTCAGTCGATCCCGTTATTCGAGACCGCATTTGCGAGGTGTACAGTGCTCTTGGTTCTGTCTTATTTGTGGTTGAGGA GAACTGGACAACCTATGTTTGGACCAGCACATGCCAGGAAACTTCTTATTTCAAGAGCCTTGGTGGGATTCTTGTCCCTACTCAGCTTTATCTACTGGTT AGTATAACATTCTCTGTTACTTCTGGTGTTACTTATGTTGGTTTTGGAAAACATCTCATGATCCATCACCGACTTTTCTCTTTCAGTGTGCAACGATTGC CCTTGTCTCAAGCTACTGTACTAAATTTTACAACTCCCATCATGGCTTCAATCGTGGCAAGAATTGCATTTCATGAGAAGTTGAAAATCGTTGACATTGG AGGTCTTGCTTGCAACTTCTTTGGCGTGCTCTTTATTTTCAGACACAGCTTCACTGCACAAGGTGAGCCAGTTGGAGATAGTTCAGAAGGCAACACCGGT TTGAATGGGTTCCATTATGCATATGCAATATTAGCTGGTCTGATATCGTCCATCACTGGTGGAGTCAGTTACTGCCTTATAAGGGCTGGATCTAAGGCCT GTGATCAGCCTGTGACCACCGTATTTTCATTTGGCATTCTTGCTGCCCCGTTAGCTCTAGTGTGCATGTTCATTTTTGAGGATCTTGTGTTGCCAGAAAT GAGCTCCCTCTTCCTTATGCTTCTACTCGGAGGTCTGGCCTTCTTAGCTGAGGTGTTCTTAGCTCGTGGCCTGCAGCTTGAGAAAACCAGCAAAGCTGCA AACTTTCAATACCTCGAGGCTGCATTCACAGAGCTGTGGGGGATCGCTTCCTCGATGATATTAGCTTCGTTCGGAGGACTCATTGGCTGTTTACTCATCT TAGCTTCGATCGGTTGTACCATATACATCGGCCCTGATAAAGACATGGAATGA
AA sequence Show only first row Show all	>Lus10030012 pacid=23159739 polypeptide=Lus10030012 locus=Lus10030012.g ID=Lus10030012.BGIv1.0 annot-version=v1.0 MAASSTEISDGDNAVELVVCDVPALSSTESNGDAAGDAAESEEIAPLLKQQAERPKINIFSVSYSRRKPREHAIKLPESDAQVSQLILWLWGGSRYSGML CVAVSSAIYFFMEVLSDVFSGKGVFPFSGTELHNLDFYNGSSVDPVIRDRICEVYSALGSVLFVVEENWTTYVWTSTCQETSYFKSLGGILVPTQLYLLV SITFSVTSGVTYVGFGKHLMIHHRLFSFSVQRLPLSQATVLNFTTPIMASIVARIAFHEKLKIVDIGGLACNFFGVLFIFRHSFTAQGEPVGDSSEGNTG LNGFHYAYAILAGLISSITGGVSYCLIRAGSKACDQPVTTVFSFGILAAPLALVCMFIFEDLVLPEMSSLFLMLLLGGLAFLAEVFLARGLQLEKTSKAA NFQYLEAAFTELWGIASSMILASFGGLIGCLLILASIGCTIYIGPDKDME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10030012 [exp]	0	1
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	11.0	0.7820
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	13.7	0.8522
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	14.0	0.8289
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	30.6	0.7673
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	33.9	0.7671
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	34.3	0.7494
AT1G67060			unknown protein		Lus10009161 [exp]	37.8	0.7799
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	68.2	0.7372
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10014907 [exp]	73.5	0.7406
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	92.0	0.7161

Compare expression of checked genes

Lus10030012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.