Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 1124 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G17630 702 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 690 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 634 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 611 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 595 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G05580 586 / 0 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 529 / 7e-176 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 449 / 2e-145 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 431 / 4e-138 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035312 [exp] 1576 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 672 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 656 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 551 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10040881 [exp] 548 / 0 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 539 / 3e-179 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10039138 [exp] 509 / 3e-167 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017541 [exp] 505 / 2e-164 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10015268 [exp] 496 / 4e-162 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105200 [exp] 1156 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 707 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 694 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 692 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.013G142301 [exp] 692 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 689 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 624 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.004G131300 [exp] 605 / 0 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 600 / 0 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G189100 [exp] 578 / 0 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10030013 pacid=23159684 polypeptide=Lus10030013 locus=Lus10030013.g ID=Lus10030013.BGIv1.0 annot-version=v1.0 ATGGCTCAGCAAAACGCAACTGGGAACGATTCCACAGACGATGGAACATCAATCGTCTGCTACGCGCCGACGATGATAACAACAAACGGCGTCTGGCAAG GAGACAACCCATTAGACTACTCCCTCCCACTCTTCATCCTCCAGCTCACCCTCGTCGTCGTCACCACTCGCCTCCTCGTCATCGTCCTCAAACCCTTCCG CCAGCCACGTGTCATCTCCGAAATCCTCGGCGGCCTAATCCTCGGCCCCTCTGTACTCGGCCGAATCAACCAATTCGCCAACACAATCTTCCCGTTGAGA TCCGTCATGGTCCTCGAAACAATGGCAAACGTCGGCCTCCTCTACTTCCTCTTCCTCGTCGGCCTCGAAATGGACATCTCCGTCATCAAACGCACCGGTA AAAAAGCCACCGCCATCGCCATCACCGGAATGATCCTCCCCTTTCTAACCGGATTCGGCTTCTCCTTCCTCCTCCACGACAACAACGACTCCAACTCCAT GAATCAAGCAACCTTCATCCTCTTCCTCGGCGTCGCCCTTTCCGTCACCGCCTTCCCTGTTTTAGCAAGAATCCTCGCCGAATTAAAACTAATCAACACC GAGCTCGGCCGAATCGCAATGTCCTCCGCTCTAATCAACGACATCTGTGCGTGGATCTTACTCGCGCTAGCAATCGCAATTGCAGAAGACGACAACGCCT CATTAGCATCCCTATGGGTAATCGCTTCATCCGTACTGTTCGTCCTCGTCTGCTTCTTCATAATCCGTCCTGTAATCGACTGGATGATTAAACGAACTCC AGAAGGAGAATCGTTCAACGAGTTCTACATCTGTTTGATTCTCACCGGAGTGATGATCTCCGGATTCATTACCGACGCGATCGGGACGCATTCGGTGTTC GGAGCGTTTGTGTTCGGGCTGGTGATTCCGAACGGGCCGTTGGGGATTACGTTGATGGAGAAGCTGGAGGATTTCGTTTCTGGGTTGTTGCTTCCTCTGT TTTTTGCGATGAGTGGATTGAAGACGAATTTCGCGGCGATCAGTGGCGGGACGACGTGGGTATTTTTAATGGTGGTGATTTTTCTGGGTTGTGTGGGAAA GATCGCTGGGACTTTGATCGTGACGATGTTCTATCAGATGCCGGTGAGGGAAGGGGTTACTCTGGGTTTGCTTATGAACACCAAAGGGCTCGTTGAGATG ATCGTGCTCAACGTCGGGAAAGACCAGAAGGTACTAGACGACGAGTCGTTTGCAATGATGGTGATAGTAGCGCTAGTAATGACGGCGACGATCACTCCGA TCGTTACAATAGTCTACCGGCCGGCGAGGAAGTTTATTCCCTATAAGCGACGGACGATCCAGCTATCCAGGCCGGCGTCAGAGCTACGAGTACTCGTCTG CGTGCACACGCCGAGGAATGTCCCGACGATCATCAACATTCTAGAAGCTTCCTACCCAAGCAAGAAATCCCCGCTCTGCGTCTACGTCCTCCATCTCGTG GAGCTAACCGGACGCGCCTCCGCGATGCTGATCGTGCACAACACGCGTAAGTCAGGGCAGCAGGCGGCGAACCGGACGCAGGCGCAGTCGGACCACATCA TCAACGCCTTCGAGAACTACGAGCAGCACGCCAACTGCGTCTCCGTCCAGCCTCTGACGGCGATCTCGCCGTACCCGACGATGCACGAGGATATTTGTAA TCTGGCGGAGGATAAGAGAGTCGCGATTGTGATTATTCCGTTCCACAAGCAACAGACGGTGGACGGAGGAATGGAGGCAACGAATCCGGCGTTTCGGCTC GTGAATCAAAATGTTCTGTCTCACGCGCCGTGCTCCGTCGGGATCTTGGTGGATCGAGGTCTCAGCGGCGCTGGACCGAGAATGACGGTGGCGAATCAGA TCTCGCATAACGTGGCGGTGCTCTTCTTCGGCGGTCCTGACGATCGGGAGGCGCTGTCGTACGCCTGGAGGATGTCGGAGCATCCAGGGATTTTCGTCAC CGTGATGCGGTTCATCCCCGGAGAGGACGTGGTCAGAACTGATCCAGATCCGTCTAGATCTGAACCGGAACCGATGGTGGAGACGGATGGCGGGTTCGAG TACAGAGTGAGGAACTACGAGGACGAGGAGATAATCAGGGATTTCAGAGTGGCGACGGCGAACAACGAATCAGTGTCCTACTCAGAGATCGTGGCGAACA ACGCGGAGGATACAGTGGCGGCGGGGCGGTCGATGGACAGCGGACACGACCTGTTCATCGTCGGGAGGGGACAGGGGACGGTCTCTCCGTTGACGGCGGG GCTGACAGACTGGAGCGAGTGTCCAGAGCTGGGCGCCATAGGAGATCTGCTGGCGTCGTCGGACTTCGCGTTGACGGCGTCGGTGCTTGTAGTGCAGCAG TACTGTAACCAAGAGGTGATGGATTCGCCGGAGAGTCCTTCAAAATTGGACGAGAACGCGCAGTTGACAACTGTTGAGGAGTCGGTACCGAGTTCGCCGG CTGACCAGGTTTTGACAGTGGATCAACGGTGGATCTCTCGCCGCCACGGCAGGGTTTGA
AA sequence Show only first row Show all	>Lus10030013 pacid=23159684 polypeptide=Lus10030013 locus=Lus10030013.g ID=Lus10030013.BGIv1.0 annot-version=v1.0 MAQQNATGNDSTDDGTSIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVIVLKPFRQPRVISEILGGLILGPSVLGRINQFANTIFPLR SVMVLETMANVGLLYFLFLVGLEMDISVIKRTGKKATAIAITGMILPFLTGFGFSFLLHDNNDSNSMNQATFILFLGVALSVTAFPVLARILAELKLINT ELGRIAMSSALINDICAWILLALAIAIAEDDNASLASLWVIASSVLFVLVCFFIIRPVIDWMIKRTPEGESFNEFYICLILTGVMISGFITDAIGTHSVF GAFVFGLVIPNGPLGITLMEKLEDFVSGLLLPLFFAMSGLKTNFAAISGGTTWVFLMVVIFLGCVGKIAGTLIVTMFYQMPVREGVTLGLLMNTKGLVEM IVLNVGKDQKVLDDESFAMMVIVALVMTATITPIVTIVYRPARKFIPYKRRTIQLSRPASELRVLVCVHTPRNVPTIINILEASYPSKKSPLCVYVLHLV ELTGRASAMLIVHNTRKSGQQAANRTQAQSDHIINAFENYEQHANCVSVQPLTAISPYPTMHEDICNLAEDKRVAIVIIPFHKQQTVDGGMEATNPAFRL VNQNVLSHAPCSVGILVDRGLSGAGPRMTVANQISHNVAVLFFGGPDDREALSYAWRMSEHPGIFVTVMRFIPGEDVVRTDPDPSRSEPEPMVETDGGFE YRVRNYEDEEIIRDFRVATANNESVSYSEIVANNAEDTVAAGRSMDSGHDLFIVGRGQGTVSPLTAGLTDWSECPELGAIGDLLASSDFALTASVLVVQQ YCNQEVMDSPESPSKLDENAQLTTVEESVPSSPADQVLTVDQRWISRRHGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	0	1
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	1.4	0.7830
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	6.3	0.7990
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	6.9	0.7149
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	7.9	0.7145
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	10.2	0.6905
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	13.7	0.7680
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	18.3	0.7471
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	19.3	0.7208
AT2G37890			Mitochondrial substrate carrie...		Lus10016522 [exp]	23.4	0.7275
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	27.7	0.7434

Compare expression of checked genes

Lus10030013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.