Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32980 402 / 2e-142 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035310 [exp] 511 / 0 AT2G32980 446 / 1e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225100 [exp] 414 / 3e-147 AT2G32980 436 / 1e-155 unknown protein Potri.014G158000 [exp] 397 / 7e-141 AT2G32980 429 / 1e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030015 pacid=23159791 polypeptide=Lus10030015 locus=Lus10030015.g ID=Lus10030015.BGIv1.0 annot-version=v1.0 ATGTCGATGGGGAGTGACACCACCTGGGTTGGTAAGAAGCCTCTCCGGCGGGTCGGAGGCATGTCGGGTGGGCTCTCCATCGCGCGCGCGCCTGGGTACT TGCCTATTTGCAACAATGAGGAAGTTCAGAACTTGTCAAGCTCTACGGGCGAAAAGGGAGATGACTTAATTAGGGTATTGAGAGAACTAACGGCAGTTCA GAGGAAAACTGCAGATCTTCAGGTTGAACTTCAAGGCCGAAAGGATGACAAAAATGTGGCACATTTGACACACGTGAGCGAAATGGAGAAGAAGATCGAG ACATTGTCTAGGATTACCACCATACTGAAAGATGTAATCCAGAATAAGGACCGTATTATAGCTCGACTTCAACAACCTTACTCACTTGATTGCATCCCTG TAGAAGCAGAATATCAGAAACAATTTTCGGAACTGCTTATGAAAGCTGCAAGTGACTACGGCGCCTTGACAGCATCCGTTTCTGATTTCCAATGGACTCA AAATTTCAGGGAGTCTCCTTCTGTATGGGGGGAAATGCTGCGGCCAATTCCCGTCGCATTAGCATCGTGCACCCGATTCTTCGAAGCAATGTCCGCAATG AGGGAGTCGTTCGCCACGTTGCAGGAACTCAGAGTAGGTCACCTGACTGCATCATCTTTGCCTTCAACGCCAGCAGCAAAGGATTCCCCCTCTTCTTCAC AGGTAACACCGCGAAACTCGGACCTCGTGACCCCTCCGGTTTGGAAACCCGAAGCAGATCAAGTTGATAGCTTGAGTAATAGGAGACTGTCATGGCCACC ATCAGTGAAACAGTGA
AA sequence Show only first row Show all	>Lus10030015 pacid=23159791 polypeptide=Lus10030015 locus=Lus10030015.g ID=Lus10030015.BGIv1.0 annot-version=v1.0 MSMGSDTTWVGKKPLRRVGGMSGGLSIARAPGYLPICNNEEVQNLSSSTGEKGDDLIRVLRELTAVQRKTADLQVELQGRKDDKNVAHLTHVSEMEKKIE TLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQWTQNFRESPSVWGEMLRPIPVALASCTRFFEAMSAM RESFATLQELRVGHLTASSLPSTPAAKDSPSSSQVTPRNSDLVTPPVWKPEADQVDSLSNRRLSWPPSVKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32980			unknown protein		Lus10030015 [exp]	0	1
AT4G30010			unknown protein		Lus10001443 [exp]	4.9	0.8789
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	6.0	0.8752
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	7.1	0.8706
AT5G66440			unknown protein		Lus10028329 [exp]	12.7	0.8379
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	13.9	0.8470
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	15.4	0.8649
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	15.7	0.8682
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	17.0	0.8670
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	18.5	0.8700
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	20.7	0.8521

Compare expression of checked genes

Lus10030015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.