Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32970 752 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035309 [exp] 1107 / 0 AT2G32970 746 / 0.0 unknown protein Lus10007227 [exp] 189 / 2e-54 ND / Lus10029998 [exp] 164 / 8e-41 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10029986 [exp] 159 / 1e-40 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035322 [exp] 149 / 3e-38 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10018543 [exp] 129 / 2e-30 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035308 [exp] 98 / 9e-23 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037440 [exp] 94 / 2e-19 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10039716 [exp] 89 / 1e-18 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158200 [exp] 879 / 0 AT2G32970 797 / 0.0 unknown protein Potri.002G224900 [exp] 837 / 0 AT2G32970 772 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030016 pacid=23159728 polypeptide=Lus10030016 locus=Lus10030016.g ID=Lus10030016.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCTAGCGACGACAGATGCGATTTTCCTCTAACCAGTCTCCAACTCGGAGATTTGCAGTCATATCTTTCAGATCTTAGCCTTTTTGTGGCCT TTGAAAGTAAGAAGGTATACATCTTGGTAGACAATAGACCATGGTTAAGGAGTTTGGGTTCAAGGCCAGCACACTTGTGGCAGTTGATGGTTACCAAGTC AAGGTTATCTCCATTTGCAAACACCAAGGCACAGAGAGGGAAAAAGCAAGGCAAGGGAACTTGTTCTCAGCCAGATACCAGCAAATCAAAGAATATTGAG ACATGGTTCTCGTTGATAGATGCAAGGAACTTCTCTCAAAAGGCTGGTTTGTTGCCTGTGAAGAAGTTGAGAAAGTCTTTGTTCTTGAGCAGTGAGCTGC ACAGAACTCTGTATGGGTTTATAGTGTTTGAAGTTGCTTGGAGCAACGTCCGAGGTATTAACTACTTGAATGAACTTCAGACGGACACATCTCTGGCTAT CGAGGCAAAAGTTATGCAAAGATCGGAATTCGACAGTATTTCACAAGCATCAAGCTCTATGTCCTCTTGGTTTTCGGGAACATTGTCAGAGCAGCGACAA TTGAAAGATTATCTGGATTCTGCTGCAGGAGAAACGTTCTACGATGCAAAAGAGAAATTTTCAAGAAAAGGTGCTTTTGATGAAGATGATGATACCACTG AAGATAATTTGTGGACTGCGAATTCCCCTCATAGCACATCCACCAGTTTCAGTGACTCCGAGGATACGGAGGATAACATTGAACCGCACACTCCTCCACC GAGCGGCCCTTATAAGAGAAGAAGGGTTACTAAGTCAATTGCCGAAGGGGTTGAAGTTGATTTTTATTCTGAAACACAGGGCAGAAGCAAAGGTTTGTTA CAAAGCTCGGAGACTGATAGCAATGATACTGAAAATGGTGGCGAAGCTAAGCAGTACAAGGATGTACTGATTCTGATGAGGTTTGATGACCACGACCTGC CATTTAAACTGAAGCAAGTCATAATGGCTGACCTGCGGTTGTTGACTCTTTTAGAAGCAGGCCTTCCATCATGGGTTATCTTTCTGCAATCATATCCAGG GTTTTGCCATCTCTATCGCCCATGGATGTGTCCCCTGGCTCGTGCATTGTACGTTTCCATCTCGATTGTCACAGTTATCATCGGCTTTTATGATCTGTAC AAAAACGTCCCGGTTCTCAAGGCGACAGCATCGCGTCTGTGTGGACCCCTTTTCGACTGGATCGAGACCTGGGAAATGGTCTCCAGGATTAAGTATCTGG GTACTATGCTGTTTCTTCACAATTTCCAGAAGGCCCTCACGTGGTCCTTAATGATCACCAGCACTATCCGGTCTTTCCTTTCGGTTTTTACCCAACCTCT GGTTGGACCGTTGGTGGAGTTAATAACTTTGCTCCTCCCGTTGTGGAATGAGGTTATCGAAGTGCTCGACCGGCTATTTTCAGTCGTTTGTCTTATGGTG TCAACCACCTGCAACGTAGTTGGAGACGTTCTCGAGTTTTTCCTGTGGCCTATATGGGTAACCATCTCCTTCGTCTGGACCTTCGCAACTTCAATTTTGT ATCCCGTATTCTGGATAATTTGGGAAGTAATCTACACTCCAGTTCGTATGGTACTTGCTGCAGCTAGCTTCCTGGCCGTCATTTTAAGCTTGGTAGCGCA GGTGTTTATCGACGTTTGGCGATCTATGAGTAGCATAGTCCAGCTTGCTTCAGCTTCGGAGGCGACAGTGAGCACTTACCAAGTTTCTATATGGAGATCG CTTTGGAACGACCTCTTTTCACAGGTTTTCCGTGCTCTGAGGAGTATATTAAACGGTTTCGTGGCCTTCTTCACAGCATGCAACAGACATCGACTCAGTA TATACAACCATCTTACAAGATTACTTGGTGGAGCTCAAAGATTTCATACTTCGGATTCGCACTACATTAGGAAGCCATACGAATCACGGAGTCTGTGTCC CAAACAGGCGGCAAAAACCAGTACATCTCTGGTGCTCTTATCCTGTCGTGAAAATCCCGCGATGATGAACATGGAAGGTTTCCAGAACTTCACCGACGCA ACGATGAAGAGGTTTTCTCGAGACGGACTCTTGCAGATGGAAGAACTCGAGATATCGGTTGATCCAGACAAGGACACACTCCGTTGCCCGCCGTTAGAGA AGCTGCTGGATCTGGCCTCCAAGAGGAAAGCAGACGCTAAGAGACTCTCCCTGTTAGGTCTAATCAGGTTTGAGTCCAACAAAATCGATCTCCTTATTCC GATGAATTCTACATGTTCCCTGGTATTGGTTGTTGAATTCGAGGGCGAGAGGCTTTTCGCAAATCTGATAGCTAGCTCTCCACTCTTAGAATCCCTGGAA CTCGAATCTATTGAGGGAATGAAGAAGATCAGGCTGTCTAATCTTCCCAATATGAAGCAGCTGCGTTTCTCGTTATGTCACGATCTCGAGGCAATTGAAT TTATAGCCCCTCAGCTGAATACTCTGGAAATCGATGATTGTGGTTCACTGAGGTTGGGTGATGTTTCCCAACTCGGAAATCTGAAATCATTGACCATAGC TCGATCCAGCTTAGCGGAGAAGAAGCTGAAACTTTCGTGTCCAAAACTTGAGGAATTCATTTTAGTGGCACCACCGGGATTGGAAGAGATTGAGCTCGAC GCTGGGCCGACTTTTCGAGAATTCTACTTGCATTTGAATAAGCCGGATAAACTAAAGAAATGTGAAATCCGCAATGCGGCTACTGATTGTAGATGGAAAG TCATGGTCTACAATCAAAATTATACACTCGAATGGTTTGTTGGTCTGAAGAGGTTCCTTGCCAGATTCTCTCAGTTCCACATGACCGTTACCATCTTCGC TCTCGGGTAG
AA sequence Show only first row Show all	>Lus10030016 pacid=23159728 polypeptide=Lus10030016 locus=Lus10030016.g ID=Lus10030016.BGIv1.0 annot-version=v1.0 MGKASDDRCDFPLTSLQLGDLQSYLSDLSLFVAFESKKVYILVDNRPWLRSLGSRPAHLWQLMVTKSRLSPFANTKAQRGKKQGKGTCSQPDTSKSKNIE TWFSLIDARNFSQKAGLLPVKKLRKSLFLSSELHRTLYGFIVFEVAWSNVRGINYLNELQTDTSLAIEAKVMQRSEFDSISQASSSMSSWFSGTLSEQRQ LKDYLDSAAGETFYDAKEKFSRKGAFDEDDDTTEDNLWTANSPHSTSTSFSDSEDTEDNIEPHTPPPSGPYKRRRVTKSIAEGVEVDFYSETQGRSKGLL QSSETDSNDTENGGEAKQYKDVLILMRFDDHDLPFKLKQVIMADLRLLTLLEAGLPSWVIFLQSYPGFCHLYRPWMCPLARALYVSISIVTVIIGFYDLY KNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKALTWSLMITSTIRSFLSVFTQPLVGPLVELITLLLPLWNEVIEVLDRLFSVVCLMV STTCNVVGDVLEFFLWPIWVTISFVWTFATSILYPVFWIIWEVIYTPVRMVLAAASFLAVILSLVAQVFIDVWRSMSSIVQLASASEATVSTYQVSIWRS LWNDLFSQVFRALRSILNGFVAFFTACNRHRLSIYNHLTRLLGGAQRFHTSDSHYIRKPYESRSLCPKQAAKTSTSLVLLSCRENPAMMNMEGFQNFTDA TMKRFSRDGLLQMEELEISVDPDKDTLRCPPLEKLLDLASKRKADAKRLSLLGLIRFESNKIDLLIPMNSTCSLVLVVEFEGERLFANLIASSPLLESLE LESIEGMKKIRLSNLPNMKQLRFSLCHDLEAIEFIAPQLNTLEIDDCGSLRLGDVSQLGNLKSLTIARSSLAEKKLKLSCPKLEEFILVAPPGLEEIELD AGPTFREFYLHLNKPDKLKKCEIRNAATDCRWKVMVYNQNYTLEWFVGLKRFLARFSQFHMTVTIFALG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32970			unknown protein		Lus10030016 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	2.0	0.9817
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	2.6	0.9728
AT1G72490			unknown protein		Lus10015679 [exp]	2.8	0.9780
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	3.7	0.9786
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	3.9	0.9782
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	5.5	0.9623
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	6.8	0.9568
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	9.4	0.9708
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	18.1	0.9529
					Lus10024349 [exp]	18.3	0.9566

Compare expression of checked genes

Lus10030016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.