Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32650 192 / 4e-64 RmlC-like cupins superfamily protein (.1.2) AT2G32180 192 / 5e-64 PTAC18 plastid transcriptionally active 18 (.1) AT4G10300 64 / 8e-14 RmlC-like cupins superfamily protein (.1) AT4G10290 59 / 5e-12 RmlC-like cupins superfamily protein (.1) AT4G10280 54 / 5e-10 RmlC-like cupins superfamily protein (.1) AT3G04300 52 / 1e-09 RmlC-like cupins superfamily protein (.1) AT2G27402 37 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035307 [exp] 255 / 7e-89 AT2G32180 190 / 2e-63 plastid transcriptionally active 18 (.1) Lus10035660 [exp] 64 / 2e-13 AT4G10300 147 / 5e-46 RmlC-like cupins superfamily protein (.1) Lus10037245 [exp] 63 / 4e-13 AT4G10300 149 / 8e-47 RmlC-like cupins superfamily protein (.1) Lus10035659 [exp] 62 / 9e-13 AT4G10300 175 / 5e-57 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156900 [exp] 195 / 4e-65 AT2G32650 203 / 2e-68 RmlC-like cupins superfamily protein (.1.2) Potri.013G089600 [exp] 69 / 2e-15 AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) Potri.002G254800 [exp] 47 / 2e-07 AT3G04300 143 / 8e-46 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05899 [flax] [poplar] Cupin_3 Protein of unknown function (DUF861)
Representative CDS sequence Show only first row Show all	>Lus10030017 pacid=23159856 polypeptide=Lus10030017 locus=Lus10030017.g ID=Lus10030017.BGIv1.0 annot-version=v1.0 ATGGCAAGTTTGACAGCTTCACCAAACATAAGCTTCTTATCATCAGCCAGCAGCAGAACCGATCCCAAGAAGAATCTGAGCTCATTTCGAACAAATCGAT GTTTCAGAGCGAGAGCATCAGCAGTGCAGGCGGTGAAGTCGCTTGAAGAGCTCTACAATGTGAGGGTGGAGAGGAAGGTGCCACCTCAGCGATTGGCTGA GCTTGGTGTTTCGAGATGGTCGGTTTGGAAGACCGGCAAGTCCAAGCTGCCGTGGGATTGGCATGTAGACCAGTTGGTCTACATCGAAGAAGGTGAAGTC AGGGTTGTCCCCGAAGGAAGCAAGCGGTACATGCAGTTCGTGGCTGGTGACCTCGTTCGTTACCCTAAATGGTTCGAGGCTGATCTCTGGTTCAATGGTC CGTACCAGGAGCGTTACAGCTTCCGTGCTTATGGTGATGACTAG
AA sequence Show only first row Show all	>Lus10030017 pacid=23159856 polypeptide=Lus10030017 locus=Lus10030017.g ID=Lus10030017.BGIv1.0 annot-version=v1.0 MASLTASPNISFLSSASSRTDPKKNLSSFRTNRCFRARASAVQAVKSLEELYNVRVERKVPPQRLAELGVSRWSVWKTGKSKLPWDWHVDQLVYIEEGEV RVVPEGSKRYMQFVAGDLVRYPKWFEADLWFNGPYQERYSFRAYGDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	0	1
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	1.0	0.9550
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	8.1	0.9492
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	8.9	0.9322
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	9.2	0.9513
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	9.8	0.9240
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	10.7	0.9482
AT2G19740			Ribosomal protein L31e family ...		Lus10025830 [exp]	10.8	0.9034
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	11.7	0.9485
AT2G01755			unknown protein		Lus10030691 [exp]	12.0	0.9343
					Lus10008697 [exp]	12.0	0.9315

Compare expression of checked genes

Lus10030017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.