Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41270 128 / 7e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035306 [exp] 422 / 2e-149 AT5G41270 159 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127200 [exp] 135 / 1e-36 AT5G41270 124 / 1e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04032 [flax] [poplar] Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Representative CDS sequence Show only first row Show all	>Lus10030018 pacid=23159804 polypeptide=Lus10030018 locus=Lus10030018.g ID=Lus10030018.BGIv1.0 annot-version=v1.0 ATGGAAGGAGTTTTAAGATTCATACCTAGCGGGGATGAAATGAGAGAGCTCTGTACAGTCGCCTCTAAAACCCAGGAGAAAGCTGTGAAGAGAGGTTTAT CCGATGAGCTAACAGAGCAGCGGGCTACCGGCTGGCTCGGTTGTGGGCTCTTTTGCCAAATTTCAGTACCTGTTCGACGAAATTCCCAGCTGAGGAAGTC GGTCCTGAGTACAACGCCGATGGCGAAGGGAAAGAAACCGATGAACCCACAATCAACGGGGAAGTCGCAGGACAAGGGTCCACCTCGTAATTCCAGGGCA ATGCTGAAACTTGACCACCTTCAAAGGCTAGCTGAGTGGGCTGGTGCAGAAGCTTCAATCCCTTCTCTTGGTGCTTTCCTTGGTCGCCAGTTCGCCACCG CTGGAGAAACTCTGGGTGTCTCGCCTGACCCTTTGCTTATTCCGTGCCAGAGATGTGAGACTATTCTTAAGCCAGGCTTCAATTGCACGATCCGGGTCGA GAAGAATCGATCAAAGCCGAAACACAGACGCAAGAAGAGCAAGACGAACCACACTCAATCACAGAACAATGTCGTCTACACGTGCCATTTCTGTTCTTTC AGGAACCAAAAACGAGGGACTCCGAAGGGCCATGTCAAAGGCATATCCCCACCCAAGCCAAAGCCTAGTAAGCCTTGTTTGGCCAAGCCGGTCACTTCCA TTAACCCGATCACCCCGCATACGGAAGAAGCCCCCACTAGCAACAACAAGAAGGATACTGAGACTACAAAAGTTGACGAGGTGGACACTCCAATGACAAA CAGCCCGGGGACTCCATTAGACAAAAGTGCCAGAGCAACACCGTTGTTGGAGGCCTTGAGGAGGAAGAGGAACAGATCGAAAACCAAGAAAAAGCCGGAA GATTTCGAGAGTGCTTCAGCTGCAACAATGGTGGAGACGGCTGAAACGAGCATTGGTGGTTCGAAGAAGAAGAGGAAAGCATGGACAAGCTTGAAGGAGA TAGCTGAGAGTAATGAGAAAGATGCTAGGCAAAAACTAAGTAACTTTGTACTCCCATTTTCCTTGTAG
AA sequence Show only first row Show all	>Lus10030018 pacid=23159804 polypeptide=Lus10030018 locus=Lus10030018.g ID=Lus10030018.BGIv1.0 annot-version=v1.0 MEGVLRFIPSGDEMRELCTVASKTQEKAVKRGLSDELTEQRATGWLGCGLFCQISVPVRRNSQLRKSVLSTTPMAKGKKPMNPQSTGKSQDKGPPRNSRA MLKLDHLQRLAEWAGAEASIPSLGAFLGRQFATAGETLGVSPDPLLIPCQRCETILKPGFNCTIRVEKNRSKPKHRRKKSKTNHTQSQNNVVYTCHFCSF RNQKRGTPKGHVKGISPPKPKPSKPCLAKPVTSINPITPHTEEAPTSNNKKDTETTKVDEVDTPMTNSPGTPLDKSARATPLLEALRRKRNRSKTKKKPE DFESASAATMVETAETSIGGSKKKRKAWTSLKEIAESNEKDARQKLSNFVLPFSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41270			unknown protein		Lus10030018 [exp]	0	1
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	1.7	0.8777
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	5.9	0.8841
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	8.9	0.8817
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	10.7	0.8646
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	11.7	0.8577
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	11.8	0.8171
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	13.8	0.8486
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	14.1	0.8770
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	14.4	0.8414
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	14.7	0.8172

Compare expression of checked genes

Lus10030018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.