Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17270 840 / 0 Protein prenylyltransferase superfamily protein (.1) AT5G37130 792 / 0 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035305 [exp] 1382 / 0 AT5G17270 997 / 0.0 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080800 [exp] 917 / 0 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10030019 pacid=23159742 polypeptide=Lus10030019 locus=Lus10030019.g ID=Lus10030019.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCTCCACCCCCTGAACTCCTACTCCCCAAGCGGGACCTTATCCGCAGCTACGAACTTCGTCTCTTTCGTTGCACTTACTCTCCTCCATCTT CAGACCATCAATCTCAATCCGTCTCTTCACCCTCTTCCGGCCCGTTCAGTAGTAAGCTACACGAGACCATCAATCAGGTGCTCAGCTTCATCGAGAACGG GAACTATCTCCAAGCTCTTTCCTTCGCCGAGCTCCTCTCACTTGACTTCTCTAGCTCCGATGATGACCGAGTTCGATCCGAGCTGGATGCCAGCGTTGAA CGGTTCATTGGTAATGGAGATGATGACGGCGAGGAAGAAGAAATTGCCTGCAGGATGATTCTAGTGTTGTGTTTTGGCGTTGCCGCGCTTTTCTACTTCA CTCAGTGCAATACTACCGGGCCAGTGGATGAGTTATCTTTCTCGCCTCTGCCATTCAAATGCTCGGAAAGTAAAGAGAAGATAGACTGGGAAGCTTGGGC AACGAATCAGCTTATGTCTGAAGGTTCTGAGTTGCTTGGGAAGTTCTCCAATCTTCAGTGCATAGTCTTTGCGAAAACCCTGGTCATGAAGATGAAAGAT TTGTCGTTTAAAGGGAGCATTTCTTCTACATATGGGATGAGAAGCGTTTCTTGGTGGCTCTCTAGGATGTTACTTACTCAACAAAGGGTTTTGCACGAGC TTTCGTCTTCTGTGTTCGATTTGTTGCAAGTGTATGTGGTTGAAACGCTAAATCATTTCGACACTAGAGAGAAGGTGACGAACTACTGGGGTGCCAAGTT ACTTGATGAAGAAGCTTCTACCCTCGTCTCGATTGCCAACTTGGAGGCTGGAATTATACAGCAGCACTATGGACGTGTTGATTTAGGAAGAATGCATATC GATTCAGCTGAAGCTGCAGCTGGGCTTGAGTTGTCTGTGACCGGAGTTCTTGGATATCGTACTATCCATCAAGTGCATCCAACGGCTCAGAGAGTTCTTG TTTCAAACAGAAGTTCCTCGGTTAGCTCTGATTCCCAGTCTAAGGTTGTGGAACAAAGTTTGGATGCTCTAAAACCAGAAAATTCTGAGTCTTCCGACAT ACTTCGGAAGCCAAAGCTATTGGATAACTATGGTAAAGCTGGAATGAAATTTCAGCAAGACGAGATTAATGGTCCCGGTGCTGCTTCTTCTCCTTTAAGT CCAACCCAACAGGCAGTGATCCTGGCACATTGCATTTTGATCGAGAAAGGTTCACGACAAGATGAATTGCAGAAGTGGGATTTAGCTCCGTATATCGAGG CAATTGATTCTCAGCCATCATCATTGTTTGCTCTACAATATTTCTGCCACCTTTTGCGTGTTCGGTGGGAGTCAACTCGTAGTCATACAAAAGTTCGTGC AGTAGAAATGATGGGAAAGCTGGTCGAGGATCTTGAAAAGCTGTCTCCTGGAGTGGAACAAAGGATTCCTTTTTGCTATGTAGCTAATATCCCTACGATT CCAGCTCTGAAAAAGGAATATGGTGAACTCCTTGTGAGCTGTGGCTTGATAGGAGAGGCTCTTGGAATCTTTGAGAGTTTGGAGTTATGGGATAATTTGA TATACTGCAACATCTTATTGGATAAGAAACCAGCTGCAGTAGAACTCATAAGGAAGCGACTCTCTGAAATGCCTAAGGACCCAAGATTATGGTGTTCCTT GGGTGACGTCACAAATGACGATAGCTGCTATGAAAAGGCTCTCGAGGTTTCAAATGACAAGTCTGCCAGAGCCAAGCGTGCGCTAGCCCGAAGTGCTTAT AATAGAGGGAAGTATGACAAATCTAAAATTCTTTGGGAATCTGCAATGGCCTTAAATTCCTTATTTCCAGATGGTTGGTTTGCTCTTGGTGCTGCAGCAT TGAAGGCTAGAGATTTAGATAAGGCGCTGGATGGATTCACCCGAGCTGTTCAACTGGATCCTGATCATGGAGAATCTTGGAACAATATCGCTTGTTTGCA TATGATGAAGAAGAGGAGCAAAGAATCGTTCATCGCCTTCAATGAAGCATTGAAGTACAAACGAGACAGCTGGGAAATGTGGGAAAACTACGGTCATGTT GCCATGGACGTCGACAACATATGGAAGGCTTTGGAAGCTGTGCAGAGAGTTGTCGATACGACGAATTTTAAGAGAATCGATGTCGAGTTATTGGACAGGA TCATGGCAGAAATGGAGAGAAGAACTTCGAGTTCTGATTTGAGCAGACTCAGAGATCACAAGGCCTCCGTTGCGAATGATGATTCTATAGAGGTTGGAAA CCAAAGGGAAACTATGCAGTTGCTAGAACTGCTGGGTAAACTTCTACAGAAGATAGTGAAAAAGGTGAGCAGAGCCGAGATTTGGGGATTGTTCGCGAGA TGGCATAGAATCAAAGGAGATCTCACAATGTGCTCAGAAGCCCTATTGAAGCAAATCAGATCATATCAGGGGTCTGATCTATGGAAAGATAAAGACCGAT TCGTAAAGTTTGCGCACGCTTCGTTGGAGCTAAGCAAAGTGTACGTGGAGCTTTCTTCGTCTACAGGTAGTCGTCGAGAGCTTTCATCAGCCGAGATGCA CCTGAAAAACACGATTAAACAGGCGAGTTTTAAGATCGCGGAGAGCTTCTCGGAAACGCAAGAGTTTCGGGATCTTCAGACTTGCCTCGACGAGGTTAGG CTGAAACTCGAATCCCGTACTGCACTAGCTTCGTAG
AA sequence Show only first row Show all	>Lus10030019 pacid=23159742 polypeptide=Lus10030019 locus=Lus10030019.g ID=Lus10030019.BGIv1.0 annot-version=v1.0 MAEAPPPELLLPKRDLIRSYELRLFRCTYSPPSSDHQSQSVSSPSSGPFSSKLHETINQVLSFIENGNYLQALSFAELLSLDFSSSDDDRVRSELDASVE RFIGNGDDDGEEEEIACRMILVLCFGVAALFYFTQCNTTGPVDELSFSPLPFKCSESKEKIDWEAWATNQLMSEGSELLGKFSNLQCIVFAKTLVMKMKD LSFKGSISSTYGMRSVSWWLSRMLLTQQRVLHELSSSVFDLLQVYVVETLNHFDTREKVTNYWGAKLLDEEASTLVSIANLEAGIIQQHYGRVDLGRMHI DSAEAAAGLELSVTGVLGYRTIHQVHPTAQRVLVSNRSSSVSSDSQSKVVEQSLDALKPENSESSDILRKPKLLDNYGKAGMKFQQDEINGPGAASSPLS PTQQAVILAHCILIEKGSRQDELQKWDLAPYIEAIDSQPSSLFALQYFCHLLRVRWESTRSHTKVRAVEMMGKLVEDLEKLSPGVEQRIPFCYVANIPTI PALKKEYGELLVSCGLIGEALGIFESLELWDNLIYCNILLDKKPAAVELIRKRLSEMPKDPRLWCSLGDVTNDDSCYEKALEVSNDKSARAKRALARSAY NRGKYDKSKILWESAMALNSLFPDGWFALGAAALKARDLDKALDGFTRAVQLDPDHGESWNNIACLHMMKKRSKESFIAFNEALKYKRDSWEMWENYGHV AMDVDNIWKALEAVQRVVDTTNFKRIDVELLDRIMAEMERRTSSSDLSRLRDHKASVANDDSIEVGNQRETMQLLELLGKLLQKIVKKVSRAEIWGLFAR WHRIKGDLTMCSEALLKQIRSYQGSDLWKDKDRFVKFAHASLELSKVYVELSSSTGSRRELSSAEMHLKNTIKQASFKIAESFSETQEFRDLQTCLDEVR LKLESRTALAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	0	1
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	1.4	0.9422
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	4.2	0.9234
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	9.2	0.9000
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	10.7	0.9124
AT1G30240			unknown protein		Lus10014364 [exp]	12.8	0.8849
AT5G19485			transferases;nucleotidyltransf...		Lus10036081 [exp]	12.9	0.7700
AT2G24990			Serine/threonine-protein kinas...		Lus10017927 [exp]	20.3	0.7602
AT5G26760			unknown protein		Lus10022386 [exp]	21.4	0.8020
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	22.2	0.8817
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	22.7	0.8650

Compare expression of checked genes

Lus10030019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.