Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17180 238 / 1e-79 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78380 234 / 2e-78 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G53680 230 / 1e-76 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78370 230 / 1e-76 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 223 / 6e-74 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G17170 222 / 1e-73 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT3G43800 216 / 6e-71 ATGSTU27 glutathione S-transferase tau 27 (.1) AT1G78360 215 / 7e-71 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G78320 209 / 2e-68 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G17190 204 / 2e-66 ATGSTU26 glutathione S-transferase tau 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035304 [exp] 428 / 1e-154 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1) Lus10042468 [exp] 269 / 8e-92 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 268 / 2e-86 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 250 / 2e-84 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 225 / 1e-74 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026198 [exp] 223 / 7e-74 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 211 / 3e-69 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 190 / 7e-61 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 172 / 1e-53 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080400 [exp] 327 / 5e-115 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.004G080700 [exp] 301 / 6e-105 AT1G78380 217 / 6e-72 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.019G130433 [exp] 253 / 8e-86 AT1G17180 292 / 3e-101 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 248 / 9e-84 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 244 / 4e-82 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 243 / 8e-82 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 241 / 3e-81 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 241 / 6e-81 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 233 / 6e-78 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 233 / 7e-78 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030020 pacid=23159759 polypeptide=Lus10030020 locus=Lus10030020.g ID=Lus10030020.BGIv1.0 annot-version=v1.0 ATGGCAAAGAACGACTTGGTGATCTTGGACTGCTGGGCTAGCCCGTTCTGCGCACGGGTGAAGCTTGCCTTGGCCGTTAAGGGGCTAGAGTTCGAAGCAA GGGCCGAAGACCTCTTTGGCGGGAAGAGCGAGCTTTTGCTCGCTTCCAACCCAATCTACAAGAAGGTCCCCGTGTTCTTGCACAACGGCAATCCTATATG TGAGTCATCCATCATTGTTAGCTACATCGACGAGAAATGGCCTTCTCCTTCTCTGCTGCCTTCCTCTGCTTACGAGCGCTCCCAGGCTCGCTTCTGGGCT GACTATATCGATAAAAAGCTGTTTGACTCAGCGAGTGGCGTATGGAAGGCTTCGGGGGTAGAAGCGGTCGAGGGAGCTAAGAAGGAGTTCATCGAGGTGC TGAAGGTGTTGGAAGGAGGCTTGGGGGAGAAGGAATACTTTGGAGGGGAAGGATTAGGGTTTGTGGATGTACTTGGGATCCCGATCACTACTTGGTTCTT GGCTAGTGAGAAGTATGGCAACTTTAAGGTTGAGGATGAGTGCCCTAAGCTGTCAGCTTGGATCAAGAGATGCATGGAGCAGGAGAAAGTTGCTAGTTCT GTTCCTGACCCGGAAAAGGTCTATGAATTCGTCATCAATTTCAGAAAGATGCTGGGAATTGCCTAA
AA sequence Show only first row Show all	>Lus10030020 pacid=23159759 polypeptide=Lus10030020 locus=Lus10030020.g ID=Lus10030020.BGIv1.0 annot-version=v1.0 MAKNDLVILDCWASPFCARVKLALAVKGLEFEARAEDLFGGKSELLLASNPIYKKVPVFLHNGNPICESSIIVSYIDEKWPSPSLLPSSAYERSQARFWA DYIDKKLFDSASGVWKASGVEAVEGAKKEFIEVLKVLEGGLGEKEYFGGEGLGFVDVLGIPITTWFLASEKYGNFKVEDECPKLSAWIKRCMEQEKVASS VPDPEKVYEFVINFRKMLGIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	1.0	0.9751
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	2.0	0.9495
					Lus10022721 [exp]	2.0	0.9620
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	3.0	0.9509
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	3.7	0.9016
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	4.5	0.9288
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10026349 [exp]	5.7	0.8507
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	6.7	0.9101
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	7.5	0.9230
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	8.9	0.9093

Compare expression of checked genes

Lus10030020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.