Plant FIBer expression Database

Lus10030021 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05060 250 / 1e-83 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035303
[exp]
408 / 6e-146 AT1G05060 306 / 9e-106 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G156700
[exp]
298 / 2e-102 AT1G05060 342 / 6e-120 unknown protein
PFAM info
Representative CDS sequence
>Lus10030021 pacid=23159630 polypeptide=Lus10030021 locus=Lus10030021.g ID=Lus10030021.BGIv1.0 annot-version=v1.0
ATGAGTTTTCTCGCGGGAAGGCTAGCGGGCAAAGAAGGCGCGTACTTTTTCCAGGAGTCCAAACAAGCTGTAAATCGTCTCGCCGAGAAACTGCCTTCCA
AACCAACCACCACCGCCGGACCCCTAACCCCATCGCCGCAGACGCAGGATTCCCACGCCGACGTGCTTCCTGAAGTCCTCCGCCATTCACTTCCGCCGGG
TATCTTCGGTAAGCTGTCAGATTCATCTACCCTTTCAACCGGATCCAAGTGGATTCTTCCCTCCGACCTGAAACCCGGCTCCGGCGTCTCGTCGGACAAG
CTCAATCCTCTTAGGGCTTATGTTTCTCTGCCCCAAGTAACTTTTGGCCCCAAAAGGTGGGAATTGCCGAGTCAGGGGCACTCGATGATGGCGTCAACGG
CGAACGATAGGAGAGTTGACAAGTATACCCCGATGAATCCTGAGAAGCTCAAGGCTGCAGCTGAGGGTCTTGCTCAGATTGGGAAGGCATTTGCAGTAGC
TACTGCATTTGTGTTTGGTGGGTCTGCTTTGGTGTTTGGTGTTGCAGGAGACGATGTCCGTAGCAGAGGCAAGGACATGGTTCAGCCGAGGTTGGATACA
GTTAGGGAGCAACTGATGCCGATTCGAACTTGGGTCGAAGACAGATCGAAGAAGTGGCATCTCGACAGGCCAGAGATTGTCAAGGAGAAGCCTATGATCA
AGGAGCTTTCCAGGATTCTCGGAGCGAAAAACTCGCATTGA
AA sequence
>Lus10030021 pacid=23159630 polypeptide=Lus10030021 locus=Lus10030021.g ID=Lus10030021.BGIv1.0 annot-version=v1.0
MSFLAGRLAGKEGAYFFQESKQAVNRLAEKLPSKPTTTAGPLTPSPQTQDSHADVLPEVLRHSLPPGIFGKLSDSSTLSTGSKWILPSDLKPGSGVSSDK
LNPLRAYVSLPQVTFGPKRWELPSQGHSMMASTANDRRVDKYTPMNPEKLKAAAEGLAQIGKAFAVATAFVFGGSALVFGVAGDDVRSRGKDMVQPRLDT
VREQLMPIRTWVEDRSKKWHLDRPEIVKEKPMIKELSRILGAKNSH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05060 unknown protein Lus10030021
[exp]
0 1
AT1G58070 unknown protein Lus10015482
[exp]
2.2 0.9821
AT1G32100 ATPRR1 pinoresinol reductase 1 (.1) Lus10012143
[exp]
4.5 0.9795
AT3G54450 Major facilitator superfamily ... Lus10024156
[exp]
4.9 0.9641
AT5G56980 unknown protein Lus10025985
[exp]
5.5 0.9584
AT3G59310 Eukaryotic protein of unknown ... Lus10026744
[exp]
6.6 0.9609
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10043156
[exp]
6.9 0.9767
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Lus10013549
[exp]
6.9 0.9734
AT3G13480 unknown protein Lus10013407
[exp]
8.2 0.9499
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Lus10008112
[exp]
9.5 0.9644
AT3G62020 GLP10 germin-like protein 10 (.1.2) Lus10038014
[exp]
10.0 0.9693

Lus10030021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.