Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21630 673 / 0 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 287 / 2e-88 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G24550 242 / 1e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 235 / 2e-70 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 237 / 1e-69 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 233 / 5e-68 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT4G32710 222 / 6e-67 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G52290 225 / 1e-66 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G68690 229 / 2e-66 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G10620 229 / 2e-66 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035302 [exp] 1048 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 644 / 0 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10026689 [exp] 283 / 2e-87 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 283 / 5e-87 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 275 / 1e-83 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 273 / 4e-83 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 251 / 2e-75 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10011098 [exp] 240 / 7e-71 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 239 / 4e-70 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226600 [exp] 839 / 0 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 803 / 0 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 761 / 0 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.001G190200 [exp] 288 / 6e-89 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 282 / 4e-87 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 276 / 1e-84 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 275 / 1e-84 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 273 / 5e-84 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.017G110400 [exp] 238 / 8e-70 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 234 / 6e-68 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030022 pacid=23159847 polypeptide=Lus10030022 locus=Lus10030022.g ID=Lus10030022.BGIv1.0 annot-version=v1.0 ATGAATCCCAATCTGGGTTTAGTCGTTCTCATCTTGGCGTCGATTCTAGGTCTAGTAGCTCCGCAATGTCGCAGAGGCTGCAATTTGGCTCTAGCTTCGT ACTACGTCTGGGAAGGCAGCAACTTAACCTACATCCTCCAGCTGATGAATTCCACCGTCCAGGGAGAATCGGACTTTGACGGCCTGTTAAGCTACAACCG TCAGATAGCCAACAAAGACAGTGTCTTTCAAGACACGAGGATCAACGTCCCTTTCCCTTGCGAGTGCATAAACGGCCAGCTCCTCGGCCACGTCTTTCTC TATCCGACGGTCACAGGGGACACCTACCAGCTCATCGCCGGCAGGAACTACGCCAACTTGACCACCGTTGACTGGCTGCAGAGGTTCAATACTTATCCTG CTAATAACATCCCTGATACGAACGCGGTGGTGAATGTTACGGTGAACTGCTCCTGTGGAGATAGCTTGATTTCCAGGGACTACGGTCTGTTTGTTACCTA TCCGCTTCTTCCTGGCGATAGTCTCGATTCGATTTCGCGGAGCAGTAATGTTTCCAGGGATTTGCTGCAGCGGTATAATCCTGGTGTGAATTTCAGTGGC GGGAGGGGTTTGGTTTATGTTCCTGGCAGAGGCTTATCTGGAGGATTTGTTGCTGGCATATCTATAGCAGCAGTTGCTGTGGCGGTGTTGTTGGGCGTTT GTGTATATGTTAGGTTCTACAGGAAGAAGAAGGAGAAAGAGACGGTACTACTGCCGGCAGTAACTGGCATTACCGTTGACAAATCGGTGGAGTTCTCATA TGAAGAACTCTCCAAGGCTACCGATGACTTCAGTTTGGCTAACAAGATTGGTCAAGGTGGCTTTGGAGCTGTTTACTATGCAGAATTGCGGGGAGAGAAA GCTGCAATCAAGAAGATGGACATGCAAGCATCAAAGGAATTTTTTGCTGAACTCAAGGTTTTGACACATGTTCATCACTTGAACCTGGTCCGGCTGATTG GATACTGCGTTGAAGGATCTCTCTTCCTGGTGTATGAATTCATAGAGAATGGAAACTTATCTCAGCATTTGCGTGGTTCTGAGAGGGAACCATTATCCTG GGCGGCCCGAGTACAAATTGCACTTGATTCTGCCAGAGGGCTTGAATACATCCATGAGCATACCGTTCCTGTATATATCCACCGTGATATCAAGTCAGCA AATATATTGATTGACAAGAACTATAGAGCAAAGGTTGCAGATTTTGGTTTAACGAAACTGACTGAAGTTGGAAGCACCTCGCTCCCTACGCGTCTTGTTG GCACATTCGGATACATGCCACCAGAGTATGCTCAATATGGCGACGTTTCACCGAAAGTTGATGTATATGCCCTTGGAGTCGTCCTTTACGAGCTTATTTC GGCTAAGGAAGCCATTGTAAAGCCAAATGGATCCAACACCGAATCAAGAGGCCTCGTCGCGTTGTTTGATGATGTCCTCGACCAACCGGATCCTCAAGAA GACATCAGAAAACTAGTCGATCCAAGGCTCGGCGAAAACTACCCCCTTGACGCAGTTCGTAAGATGGCCCAGCTAGCCAAGGCGTGCACACAAGAGAACC CTCAACTACGTCCGAGCATGAGATCCATCGTTGTAGCTCTAATGACGCTCTCCTCAGCAACCGAGGATTGGGATGTCGGTTCGTTCTACGACAACCAAGC TCTTGTCAACCTAATGTCCGGACGGTAA
AA sequence Show only first row Show all	>Lus10030022 pacid=23159847 polypeptide=Lus10030022 locus=Lus10030022.g ID=Lus10030022.BGIv1.0 annot-version=v1.0 MNPNLGLVVLILASILGLVAPQCRRGCNLALASYYVWEGSNLTYILQLMNSTVQGESDFDGLLSYNRQIANKDSVFQDTRINVPFPCECINGQLLGHVFL YPTVTGDTYQLIAGRNYANLTTVDWLQRFNTYPANNIPDTNAVVNVTVNCSCGDSLISRDYGLFVTYPLLPGDSLDSISRSSNVSRDLLQRYNPGVNFSG GRGLVYVPGRGLSGGFVAGISIAAVAVAVLLGVCVYVRFYRKKKEKETVLLPAVTGITVDKSVEFSYEELSKATDDFSLANKIGQGGFGAVYYAELRGEK AAIKKMDMQASKEFFAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIENGNLSQHLRGSEREPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDIKSA NILIDKNYRAKVADFGLTKLTEVGSTSLPTRLVGTFGYMPPEYAQYGDVSPKVDVYALGVVLYELISAKEAIVKPNGSNTESRGLVALFDDVLDQPDPQE DIRKLVDPRLGENYPLDAVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSATEDWDVGSFYDNQALVNLMSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	0	1
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	2.0	0.9731
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	2.0	0.9773
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	2.4	0.9700
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	2.8	0.9713
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	5.7	0.9679
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	6.0	0.9684
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	6.9	0.9665
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	7.2	0.9653
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	7.4	0.9711
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	7.7	0.9716

Compare expression of checked genes

Lus10030022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.