Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17620 547 / 0 glycine-rich protein (.1.2.3) AT3G21630 70 / 3e-12 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G33580 46 / 8e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035302 [exp] 786 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 130 / 6e-32 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 77 / 1e-14 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149900 [exp] 625 / 0 AT4G17620 613 / 0.0 glycine-rich protein (.1.2.3) Potri.002G226600 [exp] 79 / 3e-15 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 74 / 8e-14 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 69 / 6e-12 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08652 [flax] [poplar] RAI1 RAI1 like PD-(D/E)XK nuclease
Representative CDS sequence Show only first row Show all	>Lus10030023 pacid=23159822 polypeptide=Lus10030023 locus=Lus10030023.g ID=Lus10030023.BGIv1.0 annot-version=v1.0 ATGGATTTCTCTGAGCAGGAAGTGGAACTTTTTGGAGAGGAATATGGGCAAGATGACAAAGATGACAATGGCACTCGTCATTCTTCCTCTTCGTCCTCTT CCTCTTCATCCTCGGTAGCATCCAGGTCATCAGCTTCTTCTTCGTCGGGAGCTTCGTCTTCTTCTGGAGGAGGGGGGAGTGGAAGTGGCAGTAGCAGTGG GGAAGATGACGACAATGGTGAAGAAGCGGTGGACAGCGATAAGTACCATGGTTACAAGGATGTTAACAATACTGGTGGCTATGATGAAGAGAAAGATCTT TTTGGTGATGACAATCAAGAGTATATTAAAACTACTGCTGTTAGCCAGTACCCAATTCCTGTGTTACCTGTTGTACGAACGCCCAATAATCAGGGAAGAG GAGGTTTTGGACGTGGTCGTTGGCAAAATGATAGAGGTGCAGGGCTCCTTCCCCGACCAGGATATCCTCCTCGGCAGGGGTATGGTGGATACGGTAACAA ATTCGGGAATGCTCCTCGGGATGAACGATTTGTCTCTGAACTAAAGTTTTCAAAGAGTGAAGAAACCTTGTCAAGAAAATGCGTGGCTATCCAAGCGCCA TGTGAACTTGGTTGCTATAGTCGCGTTGAAGGTGGAGAAGTCTTCTTTGATGATCGCAACTTGAGGCTTTTTAAGCGTATGATATCTGAAGATGTTGGAG CAGATCTCAATGAAGGTTTTGATACATTCACTGAAAAGAAAGATTTGGGCTCTCAAGGGTTTGGCGACCTCCTCGGTTGTATACGAGATAAAAATATTCC CTTGGACAATATGCATTTTATTACTTTCCGCAACAACTTAAATAAGATAATGCAAACTGCATATATTCGTCATGAGCCATGGGAAATGGGAGTGCATAAG AGGAATGGAGTTGTGTATCTTGATGTACATAAACTTCCGGAACGACCTCAGAGTGAGTTGGAGCGTCGAAGGTGCTACTGGGGATATTGCTTTGAGACCT TAGCCACTGAAGATCCGGGCAGAAGTGACGGAGAAGGGATCCATAACGTTGATGCCAACGTGGAATATTGTGCCGTGTTCAAGACAAAGTTAGGGGCACA TCGCATTTTGATGGGTGCTGAAATGGACTGTTGTGATTCAACTGACGATGGAAGGAGGTTCTATGTGGAGTTGAAGACGAATCGGGAGTTGGAATATCAT ACAGAGGAAAGGTTTGAGAGAGAGAAACTGCTCAAGGTTTGGATTCAATCGTTCTTAGCTGGCGTCCCGTACATTGTTATTGGATTTAGGGATGATCATG GCCGACTTGTACGAACAGAGAGACTGAAAACCAAAGATATAACACAGAGAGTTAAAATGAAGAACTATTGGCAGGGAGGTGTCTGCCTAGCATTTGCCGA CGAGGTACTATGCTGGCTTTTCGGCACAGTGAAAGAAAATGAACAAGAGCTGAGGAACCTGGCCGACATGAGGCTCGGTAACGAGTATCCATTCGATTCC GTTCGAAAGATGGCCGAGCTAGGGAAGGCGTGTACGAGGGAGAAGCCGGAATCACTGAGATCAGTTGTTATAGCCCTAACGACCATTTCATCGGCTAGCC AAGCTTGGAATCCTGAAACTTTCTACGGAAGAGGGGATGGGTGA
AA sequence Show only first row Show all	>Lus10030023 pacid=23159822 polypeptide=Lus10030023 locus=Lus10030023.g ID=Lus10030023.BGIv1.0 annot-version=v1.0 MDFSEQEVELFGEEYGQDDKDDNGTRHSSSSSSSSSSSVASRSSASSSSGASSSSGGGGSGSGSSSGEDDDNGEEAVDSDKYHGYKDVNNTGGYDEEKDL FGDDNQEYIKTTAVSQYPIPVLPVVRTPNNQGRGGFGRGRWQNDRGAGLLPRPGYPPRQGYGGYGNKFGNAPRDERFVSELKFSKSEETLSRKCVAIQAP CELGCYSRVEGGEVFFDDRNLRLFKRMISEDVGADLNEGFDTFTEKKDLGSQGFGDLLGCIRDKNIPLDNMHFITFRNNLNKIMQTAYIRHEPWEMGVHK RNGVVYLDVHKLPERPQSELERRRCYWGYCFETLATEDPGRSDGEGIHNVDANVEYCAVFKTKLGAHRILMGAEMDCCDSTDDGRRFYVELKTNRELEYH TEERFEREKLLKVWIQSFLAGVPYIVIGFRDDHGRLVRTERLKTKDITQRVKMKNYWQGGVCLAFADEVLCWLFGTVKENEQELRNLADMRLGNEYPFDS VRKMAELGKACTREKPESLRSVVIALTTISSASQAWNPETFYGRGDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17620			glycine-rich protein (.1.2.3)		Lus10030023 [exp]	0	1
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10026658 [exp]	22.2	0.8026
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	24.6	0.8188
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	31.8	0.8185
					Lus10010684 [exp]	41.5	0.8145
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10006117 [exp]	44.6	0.8080
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	47.1	0.7888
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	50.4	0.8076
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	58.0	0.7979
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024333 [exp]	58.4	0.8001
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10016613 [exp]	66.8	0.7488

Compare expression of checked genes

Lus10030023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.