Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1100 / 0 ERD (early-responsive to dehydration stress) family protein AT3G21620 1095 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 1063 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 1043 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 1042 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G62320 995 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 983 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 876 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 407 / 9e-132 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 358 / 5e-113 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035300 [exp] 1399 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 1067 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 1063 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 1012 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10000660 [exp] 1004 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 1004 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10024477 [exp] 999 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 902 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10030431 [exp] 388 / 3e-124 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156100 [exp] 1187 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1161 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 1097 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 1089 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1087 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1076 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 878 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 869 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 414 / 4e-134 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 402 / 9e-130 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10030024 pacid=23159808 polypeptide=Lus10030024 locus=Lus10030024.g ID=Lus10030024.BGIv1.0 annot-version=v1.0 ATGGCGACGATAAGTGACATAGGGGTATCGGCAGGGATAAACATACTGAGCGCATTTGTGTTCCTGATCATCTTCGCCGTGCTTAGAGTTCAGCCGTTTA ACGACAGGGTTTACTTCCCCAAATGGTACCTCAAGGGTTTAAGAGCGAGTCCAACTAGGTCAGGAGCGTTCGTCGCCAAGTTTTTGAATTTGGACTTCCG ATCATACTTGAGGTTCCTCAATTGGATGCCTGAAGCTCTCCGAATGCCCGAGCCGGAGCTGATTGACCATGCCGGACTTGATTCTGCTGTCTACCTCAGG ATTTACTTGCTAGGGCTGAAGATATTCGCTCCGATTACGATTCTGGCGATTTTGATCTTGGTGCCGGTTAATTGGACTAATAACACATTGGAGAAGAGTG ATTTGACTTACAGTGATCTTGATAAGCTGTCTATATCAAACATTCCACAAGGATCACCTAGATTCTGGACGCATTTAGTGATGGCTTATACCTTCACTCT CTGGACATGCTTTATATTGAAGAGGGAGTATGCAACAGTGGCTTCAATGAGGCTGCATTTCCTCGCATCAGAACATCGCCGCCCTGATCAATTCACGGTA CTTGTTAAGAATGTGCCACCGGATCCTGATGAATCAGTTGGTGAACTTGTGGAGCATTTCTTCCTAGTCAACCATCCAGACCACTACCTCACTCATCAGG TTGTTTACAATGCTAATAAATTTTCGAGCCTAGTCGTGAAGAAGAAGAATCTGCAGAATTGGCTAGACTACTTCCAGATCAAGCACTCAAGAAACCCTTC TAAGAAACCCACCACAAAGACTGGATTCCTTGGCTTATGCGGGGCGAGAGTGGACGCAATCGACTATTACACTTCCGAGATCGAAAAAATATCAGCAGAA ATGTCGGCGGAGAGGGAGAAGCTAGTGAACAACCAGGAGGTGATAATGCCAGCGGCATTCGTGTCGTTCAAAACTCGGTGGGCGGCTGCAACTTGTGCAC AAACACAACAGTCCAGAAATCCAACAGAATGGTTGACCGAATGGGCTCCGGAACCAAGGGATGTCTACTGGGACAACCTGGCAATACCATACGTTTCGCT TGCGATCAGGAGGCTTATCATCGGGGTTGCATTCTTCTTCCTCACATTCTTCTTCATGATCCCGATCATGTTCGTTCAGTCCCTTGCAAACATAGAGGGG ATCGAGAAGGCGGTCCCATTTCTCAAACCACTCATTGAAATGAAAGTTGTGAAATCAGTAATCCAAGGGTTCCTTCCTGGACTTGCTCTGAAGCTGTTCC TCATCTTCCTGCCATCGATCCTTATGATCATGTCGAAATTCGAAGGGTTAATCAGTTTGTCCACATTGGAGAGGAGATCGGCAACAAGATACTACATTTT CCAGTTCATCAATGTGTTCCTTGGCAGCATCATCACAGGAACCGCATTCCAGCAGCTAAAACAATTCATACACCAATCTGCAACCGAGGTACCAAAGACG ATCGGATCATCAATCCCAATGAAGGCCACATTCTTCATAACCTACATAATGGTCGACGGCTGGGCCGGAGTAGCCGGCGAAATCCTGAGGCTAAAGCCCC TAATAATCTACCACCTCAAGAACTGGTTCCTAGTCAAAACTGAAAAGGACAGAGAAGAGGCAATGGATCCCGGAACAATCGGATTCAACACAGGCGAACC GCAAATCCAGCTCTACTTCCTCCTCGGCCTAGTCTACGCCATTGTCTCACCAATCCTCCTCCCATTCATCCTCCTCTTCTTCGCCTTAGCCTACGTAGTC TACCGCCACCAGATCATCAACGTGTACAGCCAAGAATACGAATCTGGAGCAGCGTTCTGGCCAGATATCCACGGACGAATCATCACCGCATTAGTCGTCT CACAGTTTCTTCTCATGGGACTGATGAGTACCAAAGAAGCTGCTCAGTCGACGCCATTATTGATCGCTCTCCCGGTTCTGACATTGTGGTTTAACCGGTT CTGCAAAGGGCGGTACGAGCCAGCGTTTCTTAAGTATCCGTTGCAGGAGGCGATGAGGAAGGATACGTTGGAGAGAGCGAAAGAGCCGGGTTTGAATTTG AAGAGCTTTTTGAACAGTGCTTATATACATCCTGCTTTCAAAGAGGTGGATGATCATGAAGGAGTTGAAGATGATGGGGAAGAGCTTGTGGTGACTAAGA GGGTTCAGAGTAAGCATAGTAGTAAACACAGTGCTACTTCTTTGCCTGAAGATATGGAACGTTCTTTACTGTAA
AA sequence Show only first row Show all	>Lus10030024 pacid=23159808 polypeptide=Lus10030024 locus=Lus10030024.g ID=Lus10030024.BGIv1.0 annot-version=v1.0 MATISDIGVSAGINILSAFVFLIIFAVLRVQPFNDRVYFPKWYLKGLRASPTRSGAFVAKFLNLDFRSYLRFLNWMPEALRMPEPELIDHAGLDSAVYLR IYLLGLKIFAPITILAILILVPVNWTNNTLEKSDLTYSDLDKLSISNIPQGSPRFWTHLVMAYTFTLWTCFILKREYATVASMRLHFLASEHRRPDQFTV LVKNVPPDPDESVGELVEHFFLVNHPDHYLTHQVVYNANKFSSLVVKKKNLQNWLDYFQIKHSRNPSKKPTTKTGFLGLCGARVDAIDYYTSEIEKISAE MSAEREKLVNNQEVIMPAAFVSFKTRWAAATCAQTQQSRNPTEWLTEWAPEPRDVYWDNLAIPYVSLAIRRLIIGVAFFFLTFFFMIPIMFVQSLANIEG IEKAVPFLKPLIEMKVVKSVIQGFLPGLALKLFLIFLPSILMIMSKFEGLISLSTLERRSATRYYIFQFINVFLGSIITGTAFQQLKQFIHQSATEVPKT IGSSIPMKATFFITYIMVDGWAGVAGEILRLKPLIIYHLKNWFLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAIVSPILLPFILLFFALAYVV YRHQIINVYSQEYESGAAFWPDIHGRIITALVVSQFLLMGLMSTKEAAQSTPLLIALPVLTLWFNRFCKGRYEPAFLKYPLQEAMRKDTLERAKEPGLNL KSFLNSAYIHPAFKEVDDHEGVEDDGEELVVTKRVQSKHSSKHSATSLPEDMERSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	0	1
AT3G15550			unknown protein		Lus10035906 [exp]	1.0	0.9795
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	3.2	0.9769
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	3.2	0.9748
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	4.2	0.9761
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	4.9	0.9709
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	6.0	0.9696
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	6.0	0.9754
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	6.0	0.9746
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	7.5	0.9736
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	8.4	0.9666

Compare expression of checked genes

Lus10030024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.