Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 175 / 2e-55 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 153 / 6e-47 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 148 / 9e-45 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 92 / 4e-22 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 54 / 1e-08 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035299 [exp] 222 / 2e-73 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 162 / 1e-50 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 162 / 4e-50 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 137 / 1e-40 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 136 / 4e-40 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 120 / 1e-34 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 96 / 1e-24 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 52 / 6e-09 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 49 / 1e-06 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156000 [exp] 179 / 9e-57 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 178 / 1e-56 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.011G087100 [exp] 166 / 6e-52 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 147 / 3e-44 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 91 / 3e-21 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 52 / 9e-08 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10030025 pacid=23159756 polypeptide=Lus10030025 locus=Lus10030025.g ID=Lus10030025.BGIv1.0 annot-version=v1.0 ATGGACGAGGTGATGACCACCGCCGACGCGACATTGGGAAGAGCGGCGCTGAAAATGGCCAGGACGGCTTCGTCGTCGATCCTCTCCACTCCGACGCCTC CGTCCTCTTCTCCTCCTTTGTTGTTGTTGCCGAGCAACCTCCCACTGATCTCGGCCTTCCTCGCCTTCGCCCTCGCCCAGTTCCTCAAGCTCTTCACCAA TTGGTTTAAGGAGAAGAGATGGGATTCCAAGAGGATGGTGGACTCCGGTGGGATGCCGTCTTCGCATTCCGCAACAGTGACAGCGCTCGCTATGGCTATT GGATTGCAGGAAGGGACTGGATCCCCTGCTTTCGCCATTGCTGTTGTCCTTGCTTTCGTTGTTATGTATGATGCATCTGGGATCAGACTTCACGCTGGCC GTCAAGCTGAATTGCTGAACCAAATTATGTGTGAGTTTCCGCCAGAACACCCCTTATCCAGTGTGAGACCTTTGCGCGAGTTACTTGGACACACTCCATT CCAGCCGGAACTTGATGCAGGTCGTTGTCGGAGCAATGTTGGGATGCATGGTATCTTACCTGATGAGAAACACCGACTAACATCAGAAGTACCGGTTGAA TCCTTCACCGATTTGCAAGGAAACACAGCACTCGTTCCCACGGGAGCTTCTCAAGTAGTAGTGAGGCAAGGGGAAAGGGAAAGACCTAATGTAATACTTA GAACACCAAAACTTCGAAAAATCTTTACCGTCTCGTAA
AA sequence Show only first row Show all	>Lus10030025 pacid=23159756 polypeptide=Lus10030025 locus=Lus10030025.g ID=Lus10030025.BGIv1.0 annot-version=v1.0 MDEVMTTADATLGRAALKMARTASSSILSTPTPPSSSPPLLLLPSNLPLISAFLAFALAQFLKLFTNWFKEKRWDSKRMVDSGGMPSSHSATVTALAMAI GLQEGTGSPAFAIAVVLAFVVMYDASGIRLHAGRQAELLNQIMCEFPPEHPLSSVRPLRELLGHTPFQPELDAGRCRSNVGMHGILPDEKHRLTSEVPVE SFTDLQGNTALVPTGASQVVVRQGERERPNVILRTPKLRKIFTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	0	1
AT5G01970			unknown protein		Lus10031947 [exp]	1.7	0.8737
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	2.8	0.8628
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	4.6	0.8524
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	5.0	0.8627
					Lus10015401 [exp]	10.8	0.8716
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	11.2	0.8447
AT5G41560			unknown protein		Lus10028758 [exp]	14.1	0.8319
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	14.3	0.8348
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	14.5	0.8417
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	19.9	0.8342

Compare expression of checked genes

Lus10030025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.