Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19520 635 / 0 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G01970 196 / 8e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19890 113 / 7e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09680 110 / 6e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G50280 100 / 7e-22 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G32630 99 / 3e-21 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 96 / 2e-20 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 96 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53700 96 / 3e-20 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 94 / 8e-20 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035298 [exp] 1228 / 0 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10009299 [exp] 184 / 3e-52 AT1G01970 430 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001964 [exp] 110 / 3e-27 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018019 [exp] 111 / 4e-25 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023863 [exp] 105 / 5e-23 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042016 [exp] 104 / 5e-23 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042768 [exp] 104 / 7e-23 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 103 / 1e-22 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018318 [exp] 103 / 2e-22 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228200 [exp] 732 / 0 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.002G034900 [exp] 343 / 1e-111 AT1G19520 296 / 2e-93 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.014G070500 [exp] 198 / 1e-56 AT1G01970 469 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 111 / 2e-25 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G105700 [exp] 107 / 6e-24 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G037200 [exp] 105 / 3e-23 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G131600 [exp] 103 / 9e-23 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G249800 [exp] 102 / 2e-22 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G131400 [exp] 102 / 3e-22 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 100 / 1e-21 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030026 pacid=23159709 polypeptide=Lus10030026 locus=Lus10030026.g ID=Lus10030026.BGIv1.0 annot-version=v1.0 ATGAATTTGAAGCAACTAGTGAATAAGCAGTCGGTCAAGAAGTTGTACGGAAGATACATGTCTCCATATTTGGGCAATGGGTTTAGGGATATCTCCACCG TCTCAGTTTCAGTCTCCCCAAAACTCCAAAAGTTTGAGTATTCAAAACCTGGTATGTTCATCAGTAGGTATCTCCATTCAGCTTCATCACAGGCCTCCGA GTTGAAAAGCCAATTGGGTTCGAATCCAAAACTTGATTCCGGTGATCTAGGGGATGATGGAGCAACGAATGAGTTTCTTTCTCGGTTTGCATGGATGATG AGAAAAAAGCTGTCCGAAGCCTACCCTGAATGTGATAGGCAGACGGTTGATAGTATGCTTTTGATTATAGTTGAGAAAGTTGTGTTTGAGATGGGGAAAG GTAATTTGGATCAGATGCTTGGTGGAGCTGGTGGATCTTCTTCTGTGCCATCGCAGGATTTTAGTGAGGATTTGTGGAGGACTGTGTGGGAAGTTAGTAC TTCCGTGTTGGAGGATATGGAAAAGGAAAAGAAGAAAGAGAAAATGAAACGCTTCTTGCAAGACGAGGAGGTGAAAGAGATGTGTAGGTTTGCTGGTGAA ATTGGTCTTCAGGGGGATATGCTGAGAGAGCTCAGGTTTAAATGGGCTCGAGAGAAAATGGAGGAAGCTGATTTTTATGAGAGCTTGGAGCGACTTCGAC GAGGAGAGAAAGAGGAAACAGAAGTCACGCCTGCTGGCTTGATAGAGCGGGAGGAGCAAGCTGTGATGAGTGGGGAGGAGCCTAAGGTTGTTGACCTTCC GAAGAGACATGGTACTATGAAGTACAAAATTTATGGGCTTGACCTCTCAGACCCCAAATGGGGTGAAGTTGCTGATAAATTACACGAGTCAGGAGAGCCG AAGCCAATATCAGGGAAATGCAGATTAGTAACTGAGAAAATCCTGTCTTTGAAACCGGAAGATGATCCTTCCTCACTACTTGAGGAATGGAAAGAGCTTC TGGATCCGGGAAAGGTTGATTGGGTTGCTTTGCTTGACCAGCTGAAAGAACGGGATGCTAATTTATACCTTAAGGTAGCTGAACTTCTCTTGAAGGAGGA TTCTTTCCAGGCTAACATCCGTGATTACTCTGTTCTAGTTGCTGCCCATGCTGAAGAGAACCATGTAGAAGACGCAGAAAGAATTCTCCAGAAGATGAAT GACCAAGGTATTGTGCCTGATATCTCGTCTGCCACAAGTTTGGTACACATGTACAGTAAGGCTGGTAATCTGGATAGGGCCAGACAGGCATTTGAGGATT TAAGGGCTCATGGCATTCGACCTGACGTCGCGGTGTACAACTCGATGATTATGGCTTATGTTAAAGCTGGGCAGCCTACAGTGGTTGAGTCGTCATTACT AATGGAAATGGAAGGAAGCGGTCTTCACGTCTCTGAGGACATATATATGGCTTTACTTGAATCATATGCTAAACTAGGTGATGCTAACTTAGCTGGACGA ATGGTGAAAACAATGCAATGGAAAGGATTTAACCTTACACTTGAAAGTGGGGCGTTGCTTCTTGAGGCATATGCTCAAGCTGGTAGGCCTAATGATGCAA GGCAAAACTTTGACTACATGATGAAGATTGGACTCAAGCCCGACGATCGGTGTACTTCCAGCATGATTGCAGCCTACAAGGAGAAGAATTTACTGGATAA GGCCTTAAGCCTTTTGTTGGAGCTCGAGAGTAAAGGTTTTGAGCCAGGGCTTGCTACTTATACTGTTCTTATCGATTGGTTTGGTAAGATGGGCATGATT GATGAGGTTGAGCAGCTAGTGAGGAAAATTGCAGAGTTGGGTGAGGCGCCTCCTTTGAAGATTCAAGTAATCCTTTGTGATGTTTATGCCAGAGCTAATA TGGAAAAGAAAGCGCTTCAGGCTTTAGGTGTTTTGGAAGCTAAGAAAGAGCAACTCGGAGCAGCTGACTTTGCGAGGGTTATACTTGGTCTTCATGCTGG GAAATTTGCAGAAGAGGCCAAGAAGATGAGTGCGCTGATGCTTGCGCAGGGCCATACTGAATCAGAGAAGCTTAAGATGGAAATATTTAAGAGCACAGCT TTTCAAAAACCTTTTGTCAGGAGGACATAG
AA sequence Show only first row Show all	>Lus10030026 pacid=23159709 polypeptide=Lus10030026 locus=Lus10030026.g ID=Lus10030026.BGIv1.0 annot-version=v1.0 MNLKQLVNKQSVKKLYGRYMSPYLGNGFRDISTVSVSVSPKLQKFEYSKPGMFISRYLHSASSQASELKSQLGSNPKLDSGDLGDDGATNEFLSRFAWMM RKKLSEAYPECDRQTVDSMLLIIVEKVVFEMGKGNLDQMLGGAGGSSSVPSQDFSEDLWRTVWEVSTSVLEDMEKEKKKEKMKRFLQDEEVKEMCRFAGE IGLQGDMLRELRFKWAREKMEEADFYESLERLRRGEKEETEVTPAGLIEREEQAVMSGEEPKVVDLPKRHGTMKYKIYGLDLSDPKWGEVADKLHESGEP KPISGKCRLVTEKILSLKPEDDPSSLLEEWKELLDPGKVDWVALLDQLKERDANLYLKVAELLLKEDSFQANIRDYSVLVAAHAEENHVEDAERILQKMN DQGIVPDISSATSLVHMYSKAGNLDRARQAFEDLRAHGIRPDVAVYNSMIMAYVKAGQPTVVESSLLMEMEGSGLHVSEDIYMALLESYAKLGDANLAGR MVKTMQWKGFNLTLESGALLLEAYAQAGRPNDARQNFDYMMKIGLKPDDRCTSSMIAAYKEKNLLDKALSLLLELESKGFEPGLATYTVLIDWFGKMGMI DEVEQLVRKIAELGEAPPLKIQVILCDVYARANMEKKALQALGVLEAKKEQLGAADFARVILGLHAGKFAEEAKKMSALMLAQGHTESEKLKMEIFKSTA FQKPFVRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10030026 [exp]	0	1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	1.4	0.8888
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	3.5	0.8813
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10012329 [exp]	4.0	0.8776
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	4.1	0.8912
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10012971 [exp]	4.5	0.8587
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	13.2	0.8540
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	13.9	0.8567
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	16.6	0.8248
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	17.9	0.8398
AT5G06550			unknown protein		Lus10016202 [exp]	22.0	0.8254

Compare expression of checked genes

Lus10030026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.