Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62305 350 / 7e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G11940 349 / 2e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G14550 319 / 6e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 171 / 2e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 170 / 6e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 170 / 7e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 167 / 6e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT5G11730 167 / 8e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 164 / 1e-46 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 162 / 4e-46 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035297 [exp] 657 / 0 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008770 [exp] 324 / 1e-108 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10022242 [exp] 322 / 3e-108 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020037 [exp] 323 / 4e-108 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10015553 [exp] 320 / 7e-107 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 176 / 4e-51 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 174 / 3e-50 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 171 / 5e-49 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 171 / 5e-49 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009500 [exp] 394 / 5e-136 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 367 / 3e-125 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G348400 [exp] 318 / 3e-106 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G121800 [exp] 187 / 2e-55 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 181 / 6e-53 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 177 / 2e-51 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 175 / 6e-51 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 173 / 2e-50 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 172 / 7e-50 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 165 / 5e-47 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10030027 pacid=23159757 polypeptide=Lus10030027 locus=Lus10030027.g ID=Lus10030027.BGIv1.0 annot-version=v1.0 ATGACAGCGAAGAAGAAGCTTTCAAAGCTTAACCACCACCATCACCACAAGCAGCAGCAGAAGCTTTCATGGTTTCTCTGCAAGATGCTCACCAATGTCT CCTTGTTCTTGTGCCTCATGCTCTACCTCCACTTCCACCCCCACAGACATCAACCTTCTTCCTTGACAGATCATGATCACCACTCTTTCTCCCGTGATCA TCGGACGTTCCAGGGGACCCCGAAGATCGCGTTCCTGTTCTTAGCTCGACGAAGCATCCCTCTCGATTTCCTCTGGAACTACTTCTTCAGAAATGCTGAT GCTGACAAATTCTCAGTGTATGTCCACTCCGAGCCAGGGTTTGAACTCAATGAGACCACCACTGACTCTGCTTTCTTCCATGGTCGACAGCTTAACCAGA GTGTTCAGGTAGTATGGGGTGAACCGACGATGATTCTAGCTGAAAAGCTGTTGCTTCAGGCTGCTCTTCATGACCCTGCCAATCAGAGATTTGTTCTCCT CTCTGACAGCTGTATCCCTTTGTACAACTTCAGCTACACTTACAGCTACATAATGTCATCTCCCAAGAGCTTTGTTGACAGCTTTGTTGACGAGTCGACT GGCCGCTACAATCCTGACATGTCGACCACTATCCCCAGAAGTAAATGGCGAAAGGGATCTCAGTGGGTCACATTGGTCAGAAAACATGCCGATGTAGTTG TCAATGACAACTTCGTATACCCCATCTTCAGGAAATACTGCAAGGATCTGCATTTTGTATTTCAGCATCAGAAACACTCAAACTGCATACCTGATGAACA CTATGTACAAACTTTGCTCACTATAAATGAGTTTGAGCACGAGGTCGAGAGGAGGACACTCACTTACACACTATGGGATAGTACCCCAGGAAAAGACTGG ACACAGATGTGGCACCCGGTCACTTTCGACCAGCCCGATACAGCCACCAACAAGATAAAAGAAATCAAGGGGATTGAGAACATACATTATGAGAGCGAGC ACAGGACGGAGTGGTGCAAGGTGGCGAACATCTTTTCGTCATGCTTCCTATTTGCGAGGAAGTTCAGCCAAGGAGCCGCGGTGCGGCTCCTGAACGAGGA TGCCGTTGCTTTGTTCGATCCCGAGGCTGCATTGTTGTCCAATTCTGCTCAGTAG
AA sequence Show only first row Show all	>Lus10030027 pacid=23159757 polypeptide=Lus10030027 locus=Lus10030027.g ID=Lus10030027.BGIv1.0 annot-version=v1.0 MTAKKKLSKLNHHHHHKQQQKLSWFLCKMLTNVSLFLCLMLYLHFHPHRHQPSSLTDHDHHSFSRDHRTFQGTPKIAFLFLARRSIPLDFLWNYFFRNAD ADKFSVYVHSEPGFELNETTTDSAFFHGRQLNQSVQVVWGEPTMILAEKLLLQAALHDPANQRFVLLSDSCIPLYNFSYTYSYIMSSPKSFVDSFVDEST GRYNPDMSTTIPRSKWRKGSQWVTLVRKHADVVVNDNFVYPIFRKYCKDLHFVFQHQKHSNCIPDEHYVQTLLTINEFEHEVERRTLTYTLWDSTPGKDW TQMWHPVTFDQPDTATNKIKEIKGIENIHYESEHRTEWCKVANIFSSCFLFARKFSQGAAVRLLNEDAVALFDPEAALLSNSAQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	1.0	0.8248
AT3G20190			Leucine-rich repeat protein ki...		Lus10034795 [exp]	4.4	0.7288
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	7.2	0.7900
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	8.5	0.7347
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	8.8	0.7900
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	10.2	0.7900
					Lus10000984 [exp]	11.4	0.7900
					Lus10017835 [exp]	12.5	0.7900
					Lus10018912 [exp]	13.5	0.7900
					Lus10040014 [exp]	14.4	0.7900

Compare expression of checked genes

Lus10030027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.