Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 482 / 2e-169 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 337 / 2e-110 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT2G42850 67 / 8e-12 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT1G12740 67 / 1e-11 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G15393 67 / 1e-11 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT3G20120 63 / 2e-10 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2) AT1G65670 62 / 5e-10 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15396 61 / 7e-10 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT3G20110 60 / 2e-09 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT3G20100 59 / 5e-09 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031540 [exp] 680 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 676 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 668 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 666 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 587 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035295 [exp] 415 / 7e-145 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 326 / 3e-106 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 306 / 1e-98 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 295 / 9e-95 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 622 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 333 / 3e-109 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 330 / 1e-107 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 327 / 3e-107 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 323 / 2e-105 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 313 / 5e-102 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 279 / 5e-89 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.001G270300 [exp] 75 / 4e-14 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 68 / 5e-12 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 68 / 5e-12 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030029 pacid=23159861 polypeptide=Lus10030029 locus=Lus10030029.g ID=Lus10030029.BGIv1.0 annot-version=v1.0 ATGAACTCCACCGCCCCCCAATCATCTCCGCCTCCTCCTCCGCCGGCGCAGCCATCATCGTCCGCGCTGCCGGTGCAGACCATCCCGGGGTCGTACGGGT GGCCGGTGGTGGGTCCGATAAGGGACAGGCTGGACTACTTCTGGTTCCAAGGACAGGACAAGTTCTTCAGGAAGAGGATGGAGAAGTACAAGTCGACGGT GTTCCGTACGAACGTGCCGCCGTCCTTCCCTTTCTTCGTTGGAGTCAACCCTAACGTGGTGGCGGTGCTCGACTGCAAGGCCTTCGCCCACATGTTCGAT GCTGAAGTCGCCGACAAGAGAGATTCCCTCGTCGGCGACTTCATGCCTAGTGTCGGGTTCACCGGGAATATGAGGATTTGCGCTTATCTCGACACCTCTG AACCTAAACATGCTCAGATAAAAAGGTTTGCGATGGACATACTGAAACGGAGCACCAAGGTGTGGGTCTCGGAGCTCCAGGTAAACCTCGACGAAATGTG GACGAATCTCGAATCAGGAATCTCAGCAAAGGGAAGTGCCAACTACTTGCTGCCACTTCAGAATTGCCTGTTCAAGTTCCTGACCAAGTCAATCATCGGA GCTGACGTGTCCAAGTCTCCCGACATTGCCAAGTCGGGTCCCATCATCATCGACGCTTGGCTGGCACTACAGCTCGTCCCTACGGTGCCCATCAATGTCG TCCAGCCCTTGGAAGAGATTTTCCTCCACTCCTTTCGCTATCCTTCTTTCCTCGTCCGGTGGGCGTACAACAAGCTCGTTAACTTTGTCAAGACTCACGG ACAAGCTGTGGTGCAACTTGGTATGTTTCAGTATGGACTCAGCGAGGAAGAATCGATCCACAACTTGCTCTTCATCCTAGGCTTCAATGCCTTTGGTGGA TTTTCCATCTTTCTACCCACCCTATTCGGCCGGTTACTCACAGACTCAACCGGTTTACAACAAAAGCTTATAGTCGAGGCCAGACAGGGTGGGAAGTCGG ACCTGACCTTTGAATCGGTTAAGAAAATGCCCCTAACTCAATCATTCGTCTACGAGACCCTCAGGCTCAGCCCGCCGGTCCCTAGCCAGTTTGTTAGGGC CAGGAAGGACTTTCAGTTGAGCTCTTACGAGGCCTCGTACGAGATCAAGAAGGGAGAGATGTTGTGCGGGTATCAGCCGCTCGTGATGCGTGACCCGATG GTTTTTGAAGATCCAGAGAGCTTCAAACCGGACCGGTTCATGGGCGAGAAGGGAGCTGAGTTGCTGAAATACTTGTACTGGTCGAACGGGCCGCAAACTG GTTCGCCCAGTGAGTTGAACAAGCAGTGTGCGGGGAAAGAGTACGTGACCCTCACTGCGTCGTTGATCGTGGCCCACTTGTTTCGACGGTACGATTCAAT CAGTGGGGAAGGCATGACGATCACAGCCGTTGAAAAGGCTAAGTGA
AA sequence Show only first row Show all	>Lus10030029 pacid=23159861 polypeptide=Lus10030029 locus=Lus10030029.g ID=Lus10030029.BGIv1.0 annot-version=v1.0 MNSTAPQSSPPPPPPAQPSSSALPVQTIPGSYGWPVVGPIRDRLDYFWFQGQDKFFRKRMEKYKSTVFRTNVPPSFPFFVGVNPNVVAVLDCKAFAHMFD AEVADKRDSLVGDFMPSVGFTGNMRICAYLDTSEPKHAQIKRFAMDILKRSTKVWVSELQVNLDEMWTNLESGISAKGSANYLLPLQNCLFKFLTKSIIG ADVSKSPDIAKSGPIIIDAWLALQLVPTVPINVVQPLEEIFLHSFRYPSFLVRWAYNKLVNFVKTHGQAVVQLGMFQYGLSEEESIHNLLFILGFNAFGG FSIFLPTLFGRLLTDSTGLQQKLIVEARQGGKSDLTFESVKKMPLTQSFVYETLRLSPPVPSQFVRARKDFQLSSYEASYEIKKGEMLCGYQPLVMRDPM VFEDPESFKPDRFMGEKGAELLKYLYWSNGPQTGSPSELNKQCAGKEYVTLTASLIVAHLFRRYDSISGEGMTITAVEKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030029 [exp]	0	1
					Lus10007554 [exp]	9.8	0.7820
					Lus10018224 [exp]	10.0	0.7772
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	12.4	0.7817
					Lus10020978 [exp]	13.7	0.8043
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	20.6	0.7574
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	30.9	0.7205
					Lus10004849 [exp]	34.5	0.7284
AT1G07850			Protein of unknown function (D...		Lus10036142 [exp]	35.2	0.6788
					Lus10023333 [exp]	42.2	0.6970
					Lus10011452 [exp]	42.3	0.7253

Compare expression of checked genes

Lus10030029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.