Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 423 / 3e-146 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 331 / 2e-108 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT5G48000 67 / 2e-11 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G65670 66 / 4e-11 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15393 60 / 2e-09 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT1G78490 59 / 6e-09 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT1G12740 58 / 6e-09 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G15310 57 / 2e-08 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1) AT5G36220 51 / 1e-06 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT3G20110 50 / 2e-06 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035289 [exp] 800 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 790 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 702 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 634 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 542 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035291 [exp] 345 / 1e-118 AT4G15440 169 / 2e-51 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 333 / 2e-109 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035295 [exp] 312 / 1e-104 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1) Lus10021015 [exp] 301 / 5e-97 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 570 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 333 / 4e-109 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 322 / 1e-104 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 291 / 2e-93 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 290 / 4e-93 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 290 / 8e-93 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 258 / 7e-81 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.001G270500 [exp] 75 / 4e-14 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 74 / 5e-14 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 74 / 7e-14 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030032 pacid=23159737 polypeptide=Lus10030032 locus=Lus10030032.g ID=Lus10030032.BGIv1.0 annot-version=v1.0 ATGGCTCAACCACCTCATTCTCTTTCTCCTTCGTCCTCTGCCTCGGCCGCAGCGGAGCCACCGCTACAGGCCATCCCTGGATCGTATGGGTGGCCGGTGG TGGGTCCAATAGCCGACAGGCTGAACTACTTCTGGTTCCAAGGACGGACCGAGTTCTTCAAGAAGAAGATGGACAAGTATAAGTCGCCGGTTTTCCGTAC CAACGTGCCGCCGTGTTTCCCTTTCTTCACCAGAGTCAACCCTAGAGTGGTGGTGCTTTTGGACTGCAAGTCGTACGCACACTTGTTCGACACGGAGATC GCTAACAAGACCGATACATTGCTCGGAGACTTCATGCCTAGCATGGGTTTCACCGGTGATCGTAGGATGTTGTCTTACCAGGATGTTCTTGACCCTAAAC ATGCTCAGATAAAAAAGTTTGTCATGGACATTTTGAAACGTGGCACCAAAGTGTGGACTACGGAGCTAAAAGTCAACCTAGACGAGATGTGGACCACTCT CGAAGCCAACATCTCATCCAAAGGAAGTGCCACGCTGTTCTCGCCACTTCAGCATTGTATGCTCAAGCTACTACTCAAAACCTACGTGGGAGCTGACGTG TCCGAAACAGCCCCAGACCTCCTGAAGTCCGGCCCCACCGTTATCAACGCGTGGTTCGCCCTCCAAATTCACCCGACAATCCCCATCAACGTTTGCCAAC CCCTCGTAGAGATCTTCCTCCACTCATTCCGGTACCCATCTTTCCTCATCCGATCAGGGTACAACAAACTCGCTAGTTTTATCAAAACTCATGGACATGG CGTGGTGCAACGTGGGGTGACCGAGTACGGACTCACCGAGGAAGAAGCCATTCACAACTTGTTATTCGTTCTGGCCTTCAATTCGTTCGAAGGATTTACC ATCTTTATCCCCAAGCTATTGGCCCGATTACTCGACGACTCGACCGGGTTACAAGAAAAGCTCCGGGTCGAAGCCAGGCAAAGTGGCTGGTCGGACCTAA CTTTCGCTTCGTTCAAACAAATGCCGTTGATTCGATCCTTCGTCTATGAGACTCTCCGGTACGAAGCGCCGATTCCAAACCAATTTGCCAGGGCAAGAAA GGATTTCAAGTTGAGCTCGAGCAAGGCGTCGTATGAGATCAAGAAGGGCGAGCTATTGTACGGGTACCAACCATTGGTTATGCGGGACCCTACAGTTTTT GATGAGCCGGATAGCTTCAAACCTGACCGGTTCCTGGGCGAGAAGGGGGCGGAGTTGCTGAATTACTTGTATTGGTCGAACGGTCCAGAGGCCGGTTCGA CCAGCGAGTCGAATAAACAGTGTGCGGGGAAAGAGTACGTGACAGTGACTGGGTCATTGTTTGTGGCACACTTGCTTCGACGGTATGATTCCATCAGTGG AGAAGGTTCGACGATCAAGGCCGTTGAAAAGGCTAAGTGA
AA sequence Show only first row Show all	>Lus10030032 pacid=23159737 polypeptide=Lus10030032 locus=Lus10030032.g ID=Lus10030032.BGIv1.0 annot-version=v1.0 MAQPPHSLSPSSSASAAAEPPLQAIPGSYGWPVVGPIADRLNYFWFQGRTEFFKKKMDKYKSPVFRTNVPPCFPFFTRVNPRVVVLLDCKSYAHLFDTEI ANKTDTLLGDFMPSMGFTGDRRMLSYQDVLDPKHAQIKKFVMDILKRGTKVWTTELKVNLDEMWTTLEANISSKGSATLFSPLQHCMLKLLLKTYVGADV SETAPDLLKSGPTVINAWFALQIHPTIPINVCQPLVEIFLHSFRYPSFLIRSGYNKLASFIKTHGHGVVQRGVTEYGLTEEEAIHNLLFVLAFNSFEGFT IFIPKLLARLLDDSTGLQEKLRVEARQSGWSDLTFASFKQMPLIRSFVYETLRYEAPIPNQFARARKDFKLSSSKASYEIKKGELLYGYQPLVMRDPTVF DEPDSFKPDRFLGEKGAELLNYLYWSNGPEAGSTSESNKQCAGKEYVTVTGSLFVAHLLRRYDSISGEGSTIKAVEKAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	1.0	0.8695
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	3.5	0.8326
					Lus10000528 [exp]	4.9	0.7977
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	8.1	0.7977
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	8.4	0.8079
					Lus10043450 [exp]	8.7	0.7199
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021015 [exp]	11.2	0.8173
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10014724 [exp]	12.0	0.7625
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	12.2	0.7895
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	13.0	0.8146

Compare expression of checked genes

Lus10030032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.