Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 438 / 5e-152 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 313 / 2e-101 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT2G42850 66 / 2e-11 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT2G27010 65 / 5e-11 CYP705A9 "cytochrome P450, family 705, subfamily A, polypeptide 9", cytochrome P450, family 705, subfamily A, polypeptide 9 (.1) AT1G12740 62 / 4e-10 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G15393 62 / 5e-10 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT1G65670 61 / 1e-09 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT3G20935 61 / 1e-09 CYP705A29P, CYP705A28 "cytochrome P450, family 705, subfamily A, polypeptide 28", cytochrome P450, family 705, subfamily A, polypeptide 28 (.1) AT4G15396 60 / 1e-09 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT1G64930 59 / 4e-09 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035289 [exp] 883 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 779 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 693 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 643 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 567 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035295 [exp] 316 / 7e-106 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 314 / 7e-102 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035291 [exp] 298 / 3e-100 AT4G15440 169 / 2e-51 hydroperoxide lyase 1 (.1) Lus10021019 [exp] 283 / 4e-90 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 600 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 313 / 3e-101 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 302 / 4e-97 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 293 / 7e-94 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 290 / 5e-93 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 289 / 2e-92 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 258 / 4e-81 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.001G270500 [exp] 71 / 5e-13 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 70 / 1e-12 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 70 / 2e-12 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030033 pacid=23159810 polypeptide=Lus10030033 locus=Lus10030033.g ID=Lus10030033.BGIv1.0 annot-version=v1.0 ATGGCTCATTCACCACCTATTCCTCCGTCAGCCGCGGCCGTCCCGCCGCTCCGGCCCATCCCGCGGACGTACGGGTGGCCGGGGGTGGGGCCGGTAGAGG GGAAGCCGGTGGTGGGTCCGATAGCGGACAGGCTGAACTACTTCTGGTTCCAGGGACCGGAGAAGTTCTTCAGGAAGAGGATGGAGAAGTACAAGTCGCC GGTGTTCCGTACCAACGTGCCACCGACGTTCCCGTTCTTCGCGGGAGTGAACCCCAACGTGGTGATGGTTCTGGACTGCAAATCGTACGCACACTTGTTC GACACCGAGATCGCCGACAAGAAGGATACGTTGCTCGGAGACTTCATGCCTAGCGTCGGTTTCAATGGTGATCTTCGGATGTGTGCTTACCAGGATGTTT TGGAGCCTAAGCATGCTCAGATAAAAAAGTTTATAATGGCGATCTTGAAACGTGGGACCAAAGTGTGGACTACGGAGCTGAAAGTCAACCTAGACGAGAT GTGGACCACTCTCGAAACCGACATCTCATCGAAAGGTAGTGCCACGTTGTTCTCGCCACTTCAACATTGCCTGCTGAAGCTGCTGCTCAAATCCTACGTG GGAGCTGACGTGTCTGAAACGGCTCCAGACTTGGCGAAGTCCGGCCCCACCATCATCAACACGTGGTTCGCGCTCCAGGTCCACCCGACGATCGCTATCA ACGTCATCCAGCCTCTCGAAGAGATTTTCGTCCATTCGTTCCGGTACCCGTCTTTCCTCGCCCGACCCGGATACAACAAGCTCGCTAATTTCATCAAAAC TCAAGGACATGACGTGGTACAACTTGGGGTGACCGAGTACGGACTCACCGAGGAAGAGGCAATCCACAATTTATTATTTGTTCTGGCATTCAACTCGTTC GAAGGATTTACCCTATTTATCCCCAAATTATTGACCCGGTTACTCAGCGACTCAACCTTACAAGAGAAGCTTCGGGTCGAAGCGAGGCAGAACGGTGGGA CCGAACTGACATTCACCTCCTTTAAGCAAATGCCGTTGATCCAATCTTTCGTGTACGAGACCCTCAGGCTTGAACCACCGGTTCCAACCCAGTTTGCCCG TGCTAGAAAGGATTTCACGCTTAGCTCGAGCGAGGCATCGTATAAGGTCAAGAAGGGCGAGCTGTTGTGCGGGTACCAACCGTTGGTGATGCGTGACCCT ACTATTTTCGACGACCCAGAGAGTTTCAAACCGGACCGGTTCCTGGGTGAGAAGGGAGCTGAGTTGCTGAATTACCTGTACTGGTCGAACGGGCCGGAAA CCGGTTCGGCCAGCCATTCAAATAAACAGTGCGCGGGGAAAGAGTACGTGACCGTAACTGGGTCGTTGTTCGTGGCCCACTTGCTTCGACGGTATGATTC CATCAGTGGGGAAGGTTCGACGATCAAGGCCGTTGAAAAGGCTAAGTGA
AA sequence Show only first row Show all	>Lus10030033 pacid=23159810 polypeptide=Lus10030033 locus=Lus10030033.g ID=Lus10030033.BGIv1.0 annot-version=v1.0 MAHSPPIPPSAAAVPPLRPIPRTYGWPGVGPVEGKPVVGPIADRLNYFWFQGPEKFFRKRMEKYKSPVFRTNVPPTFPFFAGVNPNVVMVLDCKSYAHLF DTEIADKKDTLLGDFMPSVGFNGDLRMCAYQDVLEPKHAQIKKFIMAILKRGTKVWTTELKVNLDEMWTTLETDISSKGSATLFSPLQHCLLKLLLKSYV GADVSETAPDLAKSGPTIINTWFALQVHPTIAINVIQPLEEIFVHSFRYPSFLARPGYNKLANFIKTQGHDVVQLGVTEYGLTEEEAIHNLLFVLAFNSF EGFTLFIPKLLTRLLSDSTLQEKLRVEARQNGGTELTFTSFKQMPLIQSFVYETLRLEPPVPTQFARARKDFTLSSSEASYKVKKGELLCGYQPLVMRDP TIFDDPESFKPDRFLGEKGAELLNYLYWSNGPETGSASHSNKQCAGKEYVTVTGSLFVAHLLRRYDSISGEGSTIKAVEKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030033 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	2.6	0.9547
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	4.2	0.9574
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10029429 [exp]	5.2	0.9396
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	5.3	0.9708
AT2G31945			unknown protein		Lus10013740 [exp]	10.5	0.9516
AT2G31945			unknown protein		Lus10039201 [exp]	12.0	0.9363
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	15.9	0.9548
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	19.1	0.9555
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	19.7	0.9559
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	20.5	0.9469

Compare expression of checked genes

Lus10030033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.