Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05070 210 / 5e-70 Protein of unknown function (DUF1068) (.1) AT2G32580 203 / 3e-67 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT4G04360 170 / 5e-54 Protein of unknown function (DUF1068) (.1) AT2G24290 120 / 1e-34 Protein of unknown function (DUF1068) (.1) AT4G30996 110 / 6e-31 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035288 [exp] 305 / 3e-107 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 163 / 1e-51 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 152 / 4e-47 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 101 / 5e-27 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 97 / 2e-25 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10035349 [exp] 75 / 7e-17 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10029975 [exp] 70 / 5e-15 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155600 [exp] 237 / 2e-80 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 229 / 3e-77 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.004G006500 [exp] 197 / 8e-65 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.005G038000 [exp] 110 / 8e-31 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1) Potri.013G026900 [exp] 107 / 2e-29 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 104 / 2e-28 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.006G187800 [exp] 101 / 2e-27 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10030034 pacid=23159716 polypeptide=Lus10030034 locus=Lus10030034.g ID=Lus10030034.BGIv1.0 annot-version=v1.0 ATGGCGGTAAACCAGGCGGCGGTGGTGAAACTGGCTCTGATAGTGATGGGATTGTGCTTGACAGGTTACATACTGGGTCCGCCTCTTTACTGGCACTTGA AGGAAGGTTTAGCTGCCGTCAGTCACTCTTCTTCTTCTTCCTCCACTTGTGCTCCTTGCGTCTGCGATTGCTCAACTCAGCCTCTTCTCGCCATCCCTCA AGAATTGAGCAACGCCACCTTTGCAGATTGCGTGAAGCATGACCCTGAGGTGAGTGAAGATGCAGAAAAGAACTTCTCGGAGCTCCTGACAGAGGAGCTC AAGCTACGAGAGACGGAAGCTTCGGAGAGCCAGCAACGAGCTGGGATGGCACTTCTCGAGGCTAAGAAGATCACGTCCCAGTACCAGAAGGAAGCGGACA AGTGCAATTCGGGTATGGAAACTTGCGAAGAAGCAAGGGAGAAGGCCGAGGCCTCATTAGTCGCGCAAAAGAAGCTCACAGCACTGTGGGAGGCTAGAGC TCGCCAGAAGGGATGGAAAGAAGGAGCTTCTTCTGCCAAGAGTAAAGGAAGCGTGCAGACTGCGTAA
AA sequence Show only first row Show all	>Lus10030034 pacid=23159716 polypeptide=Lus10030034 locus=Lus10030034.g ID=Lus10030034.BGIv1.0 annot-version=v1.0 MAVNQAAVVKLALIVMGLCLTGYILGPPLYWHLKEGLAAVSHSSSSSSTCAPCVCDCSTQPLLAIPQELSNATFADCVKHDPEVSEDAEKNFSELLTEEL KLRETEASESQQRAGMALLEAKKITSQYQKEADKCNSGMETCEEAREKAEASLVAQKKLTALWEARARQKGWKEGASSAKSKGSVQTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	2.0	0.7812
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	3.2	0.7688
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	4.9	0.7671
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10007986 [exp]	5.5	0.7055
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	6.3	0.7604
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	11.1	0.7623
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	19.3	0.7012
AT5G35080			unknown protein		Lus10008819 [exp]	21.4	0.7596
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	26.8	0.6909
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	29.1	0.7302

Compare expression of checked genes

Lus10030034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.