Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32540 592 / 0 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 588 / 0 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 555 / 0 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT4G15290 536 / 4e-180 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32610 521 / 6e-174 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1) AT4G15320 478 / 9e-157 ATCSLB6, ATCSLB06 CELLULOSE SYNTHASE LIKE B6, cellulose synthase-like B6 (.1) AT5G17420 407 / 4e-127 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 396 / 1e-123 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT2G25540 397 / 2e-123 CESA10 cellulose synthase 10 (.1) AT5G05170 395 / 2e-122 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028597 [exp] 399 / 8e-124 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 397 / 6e-123 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 397 / 7e-123 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10018902 [exp] 396 / 8e-123 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 394 / 5e-122 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10029245 [exp] 389 / 9e-121 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 388 / 2e-120 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10038008 [exp] 311 / 2e-91 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 309 / 2e-90 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227300 [exp] 822 / 0 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 803 / 0 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.011G069600 [exp] 404 / 1e-126 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.004G059600 [exp] 404 / 1e-126 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.018G029400 [exp] 399 / 1e-123 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 397 / 3e-123 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.002G066600 [exp] 395 / 2e-122 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.016G054900 [exp] 393 / 1e-121 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 392 / 1e-121 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 391 / 3e-121 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10030035 pacid=23159655 polypeptide=Lus10030035 locus=Lus10030035.g ID=Lus10030035.BGIv1.0 annot-version=v1.0 ATGGAAAAGACTAATGAAGCTTCTCTATCTTCAGGCCATCTGTACGAGAAACTTGCTCTCAAGTACTATACTCACAGAGCTTTAGACATCGTGGTAACAC TCCTCTTGACTTCTCTTCTAGTTTACCGTCTCCTCCATCTCCACAGCCATGGACTTCCATGGCTCGTTGCACTATTGTGCGAGTCCTGGTTCACCTTCCT ATGGATCCTCACCATCTCTATCAAGTGGACTCCCGCCTTTTTCCAAACTTACCCAGAGCGGCTTCCTAGCTGGGCGGAGGAGCAGGAACTGCCACCGGTG GATATGTTTGTGACGACGGCTGACCCTGTGCTTGAGCCGCCTATAATCACTATGAATACTGTTCTTTCATTAATGGCGGTGGATTATCCATCAAACAAGC TGGCTTGCTACGTGTCGGACGATGGCTACTCGCCCCTCACGTACTATTCTCTAGTGGAAACATCAAAATTTGCCAAGCTGTGGGTTCCTTTCTGTAAGAA GTACAACATTCAGGTTAGAGCGCCTTTTAGGTACTTCTCTGGTTCTGGCAACGATGATTCTCTTAATCCTGTTGATGGATCACCCGAGTTCTGGCAAGAG CGCGAAACAATGAAGGAAGCATATGGAACGCTGACCCGCAATATTGAAGAGGCAGCAGCCAGTGACCAGTCAACATGGGAAGGAATTAGTTGTGGCGATT TGGATGCTTTTGCCAATGGGGATCGCAAGAACCATCCAGCCATAATCAAGATAATATGGGAGAACAAAGAATATGGCAGTTCTTCAGCTTCTTCTGCAGA AGGGCTGCCGCATTTGGTATACATATCCAGAGAGAAAAGACCGAAATATCCACATCACTACAAGGCAGGCGCCATGAACGTCCTTACAAGAGTTTCAGGG TTGATGACGAACGCTCCATACATGTTGAACGTGGACTGTGACATGTACGCCAACAACCCCCACATCGTCCGCCATGCAATGTGTATGTTGCTTGGTGCTA GCAACGAGAGGGAAACTGGGTTCGTCCAGTTCCCCCAGTGTTTCTACGGCGCCTTGAAAGATGATCCCTTTGGCAATCAGATGGTTGTCCTTTACCAATT CGTAGGATCTGGGATATCGGGTCTCCAAGGGCCATTCTACGGAGGAACAGGATGCTTTCACAGGCGCAAAGTTATTTACGGATTATGCCCAGATGACACT CGTAAACAAGGCCGAATTCTCTCCCCTGTTCATGGTAATCCTTCAAAAGATCAAAAGCTTGTGAAATCCAAAAAAGAGTTAAAAGACTTTTTTCTCGTCT TTAATCTCACTTTCTGTTACATTCTGGCAGAAAATCTATCGGAGAAGGAACTGCTGATAACATTTGGCAATTCAAAGGAGCTTGCTAAATCAGCTGCTCT TGCTTTGAATGGTCACAACAGTAACCAAACCAAAACCTCCGAATCTAGCCTTTCTGACCTGATGGAGGCAGCAAATCATGTCTCTGGCTCTGACTATGAA TCTTCCACCAATTGGGGCAAAGCATATGTTAGTAACCAACCTATATCTCATATGTTAGTACCAATTCATTTGACTGGCCCACCTTTTCAGTTGGATCGAG ATTTTAGCTCTCCAATGATGTCATCACGTAACTGCATGGCGATGTTTCTTCTGCAGGTTGGTTGGCAATACGGCTCTGCGACAGAAGACGTACTAACGGG ACTAACCATTCACGCGAGAGGTTGGAAGTCGCTGATGTGCAATCCAACTCCTCTGGCATTTCTAGGATGTGCTCCGACAGGCGGTCCATCTTCCTTAACC CAACAGAAGAGATGGGCAACAGGCTTACTCGAAATCCTGATTAGCAACCGAAGCCCTTTGATCTCAGTCATCACTGCAAAGCTTCAGTTCAGGCAATGCT TAAGCTATGTCTGGATCTTAACTTGGGCTCTACGCTCCATCCCTGAGCTCTGTTACTCCTTTCTTCCTGCTTACTGCCTCCTCACCAAATCCAATTTCCT ACCAAAGGTACAAGATCCAGGATTTTACATCGCAACAGCAATACTAGCAGTGTACACATTATACACATTGTTAGAGTACTTCCAAACGGGGCTATCGATC TGGGCATGGTGGAACAACCAGAAGATGTCGAGGATCGTGGTAACGGGTCCCAGACTGTTCTCGGTTCTAGGCGTGGTGTGCAAGGTTCTAGGGCTATCAG AGACCGTGTTCGAAGTCACGCAAAAGGATAGTGACGATCAGAGTGGCAATGAAGATGCAAGTAGGTTTACGTTTGACGGGTCCCCCATTTTCATCCCCGG AACGACGCTCGTGCTGGTGACCTTGGCGGGTCTAGGAGCCGGGCTGATCGGTGGTGGTGGGTTGGGGGAGATTGTGGGATGTGTGGGGATATTGTGTTTG TTTAAGCCGTTTGTTGAAGGATTGTTTAGGAAAGGGAAGTATGGGATTCCTTTGGCTACTATTGGGAATTCTGTTGCCTTGGCTGTGGTCTTTGTTCTCT CGTTGAAACCTCTATGA
AA sequence Show only first row Show all	>Lus10030035 pacid=23159655 polypeptide=Lus10030035 locus=Lus10030035.g ID=Lus10030035.BGIv1.0 annot-version=v1.0 MEKTNEASLSSGHLYEKLALKYYTHRALDIVVTLLLTSLLVYRLLHLHSHGLPWLVALLCESWFTFLWILTISIKWTPAFFQTYPERLPSWAEEQELPPV DMFVTTADPVLEPPIITMNTVLSLMAVDYPSNKLACYVSDDGYSPLTYYSLVETSKFAKLWVPFCKKYNIQVRAPFRYFSGSGNDDSLNPVDGSPEFWQE RETMKEAYGTLTRNIEEAAASDQSTWEGISCGDLDAFANGDRKNHPAIIKIIWENKEYGSSSASSAEGLPHLVYISREKRPKYPHHYKAGAMNVLTRVSG LMTNAPYMLNVDCDMYANNPHIVRHAMCMLLGASNERETGFVQFPQCFYGALKDDPFGNQMVVLYQFVGSGISGLQGPFYGGTGCFHRRKVIYGLCPDDT RKQGRILSPVHGNPSKDQKLVKSKKELKDFFLVFNLTFCYILAENLSEKELLITFGNSKELAKSAALALNGHNSNQTKTSESSLSDLMEAANHVSGSDYE SSTNWGKAYVSNQPISHMLVPIHLTGPPFQLDRDFSSPMMSSRNCMAMFLLQVGWQYGSATEDVLTGLTIHARGWKSLMCNPTPLAFLGCAPTGGPSSLT QQKRWATGLLEILISNRSPLISVITAKLQFRQCLSYVWILTWALRSIPELCYSFLPAYCLLTKSNFLPKVQDPGFYIATAILAVYTLYTLLEYFQTGLSI WAWWNNQKMSRIVVTGPRLFSVLGVVCKVLGLSETVFEVTQKDSDDQSGNEDASRFTFDGSPIFIPGTTLVLVTLAGLGAGLIGGGGLGEIVGCVGILCL FKPFVEGLFRKGKYGIPLATIGNSVALAVVFVLSLKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	0	1
					Lus10005128 [exp]	2.4	0.8504
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	2.4	0.8069
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	4.7	0.8234
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	5.0	0.7816
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	7.7	0.7649
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	13.7	0.7791
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	15.1	0.7280
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	26.8	0.7528
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	30.3	0.7523
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	32.3	0.7350

Compare expression of checked genes

Lus10030035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.