Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10330 435 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08305 305 / 4e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 300 / 5e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 286 / 3e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 289 / 6e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 285 / 1e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 280 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 271 / 5e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G33350 271 / 6e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 269 / 4e-84 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 316 / 2e-101 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 291 / 5e-93 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008825 [exp] 285 / 6e-90 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10039974 [exp] 281 / 1e-88 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10027389 [exp] 280 / 2e-88 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031430 [exp] 270 / 3e-86 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029853 [exp] 272 / 5e-86 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 276 / 1e-85 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 274 / 4e-85 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003300 [exp] 555 / 0 AT1G10330 464 / 6e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G082900 [exp] 489 / 4e-172 AT1G10330 405 / 4e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G073100 [exp] 306 / 2e-98 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 307 / 5e-98 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 303 / 2e-97 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 302 / 1e-95 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 297 / 8e-95 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.007G050200 [exp] 291 / 1e-91 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 282 / 3e-89 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G089400 [exp] 280 / 1e-88 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030036 pacid=23159860 polypeptide=Lus10030036 locus=Lus10030036.g ID=Lus10030036.BGIv1.0 annot-version=v1.0 ATGTCACCGAAATCCTCCGAGCTCCTTCTCCAACTTCTCCAGCGATTCATCAAACACCAAATTCAACTCAACCAAATCCACGCCCACTTGATCTCCACAA GCCTTCTCAATCAAAAACCACATTCCAAATGGAAACCAACTCAGTTCTACAACACTCCGATGAGAGGCAACCTCAGCTTCGGCGCCCATTCTCACCACAC ATTCCGCCTGTTCAAGCTCATGCTGAGCTACCAAATATTGCCCAACTCCCACACTTTCCCTCCCCTGATCAAATCCGCGGGAATCTGCTCCACTTTCCGC TGCGCTGTTTCGATTCAAAGCCAAGCTTTGAGGAGGGGAGTGTCGATCGATCCGTTTGTGCAGACGTCCCTAATCGGGATGTACTCACTGTTTGGCGATG GAGTTTGCGCACGTAAGTTGTTCGATGAAATGATTTCCCGCGGTGTGTTCGAGTACAATGCGATGGTTGATGCGTATGCGAAGAATGGTGACATGGACTC TGCTGTTTCGATGTTTGGGAGGATGGCAAGGAGAGATGTTGTGAGCTGGACAAGTGTGATTAATGGGTTCGCTAAGAACGGTCTTTTCCGCGAGGCGATT GTGTTTTTTCGGGATATGATGGTTAACAATGATGGTGTCATTCGTGGGTTTGTTAGGCCTAATGAAGCAACTTATGTTAGTGTGTTATCTTCCTGTGCTA ATTTGGATCGTGGAGGTCTTTGTATTGGGAAGCAAGTGCACGGCTATATGGTTAGGAATGAGGCGATTTTCACCGTGTTCATGGGGACAACTTTGATTGA TCTTTATGGAAAGTTGGGGTCTTTGGATAAGGGTGTTTTGGTTTTTAGTAGAATGTTGAGTAGAGAAGTTTGCAGTTGGAATGCTGTTATTTCCACGCTT GCGAACAACGGTAGAGAAGAGGAAGCCATGGACATGTTTGAGAAGATGAAGGGTGAAGGTGTTCGTCCGAATGAAGTTACGTTTGTGGCTTTACTCACTG CATGTGCTCGTGGCAAGCTAGTTGAGCTCGGTTTTAGCGTATTCCAGTCAATGGGAAAGGAATTCGGGGTGGTGCCGAGAATGGAGCACTATGGTTGCTT AGTTGATCTCCTTGGCAGAGCAGGAATGTTGGGAGAAGCAAGTGATTTTGTAAAGAGTATGCCTTGTGAGCGTGATGCTTCTGTGTTGGGTGCCCTTCTT AGTTCTTGTACAATTCATGGTGAATTGGTGATTGGAAATGAAGTGGGGAAGAAGCTGGTTGATTTGCAGCCACAATATTCTGGACGATATGTGGCCTTGT CCAATATTAATGCTTGTGTTGGGAGGTGGGATTTGGCTGCTTACGTTAGGAAAGGATTGGTAGATGCTGGAATTCAGAAGATTGCTTCCTATAGTTGGAC TGATGCTAAATGA
AA sequence Show only first row Show all	>Lus10030036 pacid=23159860 polypeptide=Lus10030036 locus=Lus10030036.g ID=Lus10030036.BGIv1.0 annot-version=v1.0 MSPKSSELLLQLLQRFIKHQIQLNQIHAHLISTSLLNQKPHSKWKPTQFYNTPMRGNLSFGAHSHHTFRLFKLMLSYQILPNSHTFPPLIKSAGICSTFR CAVSIQSQALRRGVSIDPFVQTSLIGMYSLFGDGVCARKLFDEMISRGVFEYNAMVDAYAKNGDMDSAVSMFGRMARRDVVSWTSVINGFAKNGLFREAI VFFRDMMVNNDGVIRGFVRPNEATYVSVLSSCANLDRGGLCIGKQVHGYMVRNEAIFTVFMGTTLIDLYGKLGSLDKGVLVFSRMLSREVCSWNAVISTL ANNGREEEAMDMFEKMKGEGVRPNEVTFVALLTACARGKLVELGFSVFQSMGKEFGVVPRMEHYGCLVDLLGRAGMLGEASDFVKSMPCERDASVLGALL SSCTIHGELVIGNEVGKKLVDLQPQYSGRYVALSNINACVGRWDLAAYVRKGLVDAGIQKIASYSWTDAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	0	1
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	3.7	0.9042
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	3.7	0.9273
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	4.4	0.9372
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	7.5	0.9219
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	8.7	0.9182
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	9.7	0.8990
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	10.1	0.9240
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	14.3	0.9166
AT5G07740			actin binding (.1)		Lus10015724 [exp]	14.5	0.9118
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	20.5	0.9064

Compare expression of checked genes

Lus10030036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.