Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32520 404 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 52 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035287 [exp] 458 / 2e-165 AT2G32520 424 / 4e-152 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155200 [exp] 420 / 3e-150 AT2G32520 409 / 4e-146 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10030039 pacid=23159762 polypeptide=Lus10030039 locus=Lus10030039.g ID=Lus10030039.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCTGCTGCTGCTGACCCCTTCAAGAAGATCCAAATCCAGAGGGAAGACACTACCTTTGATGCGTATGTTGTTGGCAAAGACGATGCACCCG GGATAGTTGTGCTGCAGGAGTGGTGGGGTGTGGACTTTGAGATCAAGAATCATGCCATCAAGATTTCTCAGCTCGAACCTGGATTCAAGGCACTTATACC AGACTTGTACCGCGGAAAGGTTGGTTTGGATACTGCTGAAGCTCAGCATTTGATGGATAATCTTGACTGGCAAGGTGCTATCAAGGATATAAGTGCTTCG GTTAACTGGCTCAAGGCCAACGGTTCTAAGAAGGCTGGAGTGACTGGATTTTGCATGGGTGGTGCTTTGACAATTGCAAGCTCTGTTTTGGTTCCTGAGG TTGATGCAGCTGTGGCTTTCTATGGAGTTCCTTCACCTGAGCTTGCAGATCCTGCCCAAGCTAAGGCTCCAGTTCAGGCACATTTCGGAGAGCTTGATAA CTTTGTAGGCTTTTCCGATGTCACAGCAGCAAAGGCCTTGGAAGAAAAGCTGAAAGCAGCTGGAGTGCCATCCGAGGTACATATATATCCAGGCAATGCT CATGCTTTTATGAACAGGTCACCAGATGGTATCAAGAGGAGGAAATCCATGGGACTTCCTGATGAAGATGATGCTGCTGTTGAGCTAGCTTGGACTCGTT TCAAATCGTGGATGTGTCGTCACTTGTCGTCATAA
AA sequence Show only first row Show all	>Lus10030039 pacid=23159762 polypeptide=Lus10030039 locus=Lus10030039.g ID=Lus10030039.BGIv1.0 annot-version=v1.0 MAASAAADPFKKIQIQREDTTFDAYVVGKDDAPGIVVLQEWWGVDFEIKNHAIKISQLEPGFKALIPDLYRGKVGLDTAEAQHLMDNLDWQGAIKDISAS VNWLKANGSKKAGVTGFCMGGALTIASSVLVPEVDAAVAFYGVPSPELADPAQAKAPVQAHFGELDNFVGFSDVTAAKALEEKLKAAGVPSEVHIYPGNA HAFMNRSPDGIKRRKSMGLPDEDDAAVELAWTRFKSWMCRHLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10030039 [exp]	0	1
AT1G64700			unknown protein		Lus10001663 [exp]	11.0	0.8132
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	13.6	0.8204
AT1G52140			unknown protein		Lus10025828 [exp]	16.9	0.8171
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10000802 [exp]	17.1	0.8185
AT1G52140			unknown protein		Lus10012967 [exp]	22.6	0.7995
AT1G63310			unknown protein		Lus10008287 [exp]	33.3	0.8165
AT1G63310			unknown protein		Lus10033253 [exp]	36.5	0.8143
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	44.3	0.7469
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	44.4	0.7886
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	45.0	0.8017

Compare expression of checked genes

Lus10030039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.