Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01720 116 / 2e-27 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G68150 108 / 1e-25 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 110 / 2e-25 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 109 / 6e-25 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 97 / 2e-21 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G22070 129 / 2e-17 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G26640 78 / 6e-15 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 77 / 1e-14 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT1G62300 144 / 3e-14 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT5G07100 72 / 3e-14 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035286 [exp] 187 / 4e-56 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10038028 [exp] 122 / 1e-29 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10035971 [exp] 104 / 1e-23 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10037205 [exp] 103 / 4e-23 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 103 / 5e-23 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10016682 [exp] 101 / 1e-22 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10026409 [exp] 80 / 7e-17 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10022959 [exp] 126 / 4e-16 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10042243 [exp] 79 / 3e-15 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155100 [exp] 146 / 8e-36 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.014G111900 [exp] 125 / 3e-30 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 123 / 1e-29 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.002G228400 [exp] 150 / 3e-28 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.001G208600 [exp] 109 / 5e-25 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.015G064100 [exp] 108 / 2e-24 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.017G079500 [exp] 107 / 4e-24 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.004G007500 [exp] 141 / 2e-18 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.018G019700 [exp] 78 / 1e-15 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1) Potri.013G086000 [exp] 79 / 5e-15 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10030040 pacid=23159772 polypeptide=Lus10030040 locus=Lus10030040.g ID=Lus10030040.BGIv1.0 annot-version=v1.0 ATGGCCAGGACCAGCACCAGGAGTGGACTCTCCATTGATTCGCCAGATCTCCTCACTGCTCCCACTACTACTACTACTTCGACTACTCTCCCTAGTCATA CCCGCTCTTCTCCGGCGGCGACGACCACGACTCCCTCCTCCTGCCGCTTCCTGTTCTCCGTCGGCCAGGCTCCAACCGTCCTCAACTCCCTCCCTCTCAT GGACTCCTCCTCCTCCCCCGCTCCCGAGATCATCGCTCAGCCCACCACAATTCAGTTCGTCGATGACGGTGGCGGTGCTGATGCAGGTGGCGGTGGAGGT GTTTGTCATCTTGTTCATCATCGGCGGAAGGTGATCGATGAGATGGACTTCTTTGCGCAGAGGAATAATAATAGCGACAGCGTCGATCTAATGAGCGTCG ATTCCGATCGCCGCGATGGATTGGAATTGAAAGTTAACACTGGATTGAATCTGCTGACGAGGAATACAAGCAGCGAGCAGTCGGTTGTTGACGATGGCGG CGGGACATCGTCGACTAACGCGGACGATAGAAGGCTGAAAACAGAGGTGTTGAATCTACAGGCGGAGCTTGACAGGATGAAAGTGGAGAATCTGAGGCTG AAGGATATGCTGAATCAAGTTAACAGCAGCTACGCGGCGCTGCAGATGCACGTGATGTCGCTTCACCATGATCAGAAGCCGGTTCCGGCGCCGACGGCGG CGGACGTCGACGATAAGAAAGCCAACGGAGGAGGAGCGATGGTGCCTCGTCAGTTTATGGATCTCGGTCTGGCTTCCTCGGCGATCGGCGCCGCCGGTGG TACGACCGGCGACACTGACGATCTGTCATTGTCGTCGTCGGAAGGACGGAGTCGAGATCGGTCGCGATCGCCGACGGCGGCGAACAATAACAACGACGAA GCGTCGGCAGCAGCGGCGGCTGATGTAGACAGTAAGAAAGCGATCGTTGAGAGAGAGGAGAGTCCCGATCAAGGCGGCGGAGGAGGAGGAGGCGGAGGAT GGGCCGGAGGAGCGAGTAATAAGGTTGCGAGGTTTAACGGTTCGCCAAACAAGAGCGTCGATCAGACGGAGGCCACGATCAGGAAGGCTCGTGTGTCAGT TCGTGCTAGATCGGAAGCTCCCATGATTACTGATGGATGTCAATGGCGGAAGTATGGTCAGAAAATGGCCAAGGGAAATCCATGTCCTCGCGCTTATTAT CGCTGCACCATGGCTACTGGCTGCCCCGTCCGCAAACAGGTGCGCAGAGGACCGTACAGTACTGATAACAACCTACGAAGGGACACACACCCACCCACTC CCACCGGCGGCGATGGCAATGGCGTCGACGACCTCGTCTGCGGCGAGAATGCTTCTCTCCGGCTCAATGTCCAGCACCGACGGACTCATGAACTCCAATT TCCTCACCAGAACCCTCCTCCCATGCTCTTCAAGCATGGCCACGATCTCAGCTTCAGCTCCTTTCCCAACTGTTACATTGGACCTGACCCAAACGCCGAA CCCATTAACCGGCCTCCAACGACCACCGCCAAACCACCAACTCCAGCTCCCCTGCCCCACAACCGACANNNNNNNNNNNNNNNNCCCGTCCGGGGGGTTG CCGCTGCCGCATTGCTTCCTCAGCTTTTCGGCCAGGCGCTGCACAACCAGTCCAAATTCTCCGGCTTGCAAATGTCCCAAGATATCGACCACAACGCTGC TGCTGCTTCCTTATTCAGCCATGCCATACAAGGCGGTGGTTCCGGCGGAGGAGGAGGAGGGCAGAACCAGTTGGCTGATACGGCGGGAGCCATTGCAGCT GAACCCAACTTCAACGCAGTCTTGTGGGGGCGATCAGCTCAATAA
AA sequence Show only first row Show all	>Lus10030040 pacid=23159772 polypeptide=Lus10030040 locus=Lus10030040.g ID=Lus10030040.BGIv1.0 annot-version=v1.0 MARTSTRSGLSIDSPDLLTAPTTTTTSTTLPSHTRSSPAATTTTPSSCRFLFSVGQAPTVLNSLPLMDSSSSPAPEIIAQPTTIQFVDDGGGADAGGGGG VCHLVHHRRKVIDEMDFFAQRNNNSDSVDLMSVDSDRRDGLELKVNTGLNLLTRNTSSEQSVVDDGGGTSSTNADDRRLKTEVLNLQAELDRMKVENLRL KDMLNQVNSSYAALQMHVMSLHHDQKPVPAPTAADVDDKKANGGGAMVPRQFMDLGLASSAIGAAGGTTGDTDDLSLSSSEGRSRDRSRSPTAANNNNDE ASAAAAADVDSKKAIVEREESPDQGGGGGGGGGWAGGASNKVARFNGSPNKSVDQTEATIRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYY RCTMATGCPVRKQVRRGPYSTDNNLRRDTHPPTPTGGDGNGVDDLVCGENASLRLNVQHRRTHELQFPHQNPPPMLFKHGHDLSFSSFPNCYIGPDPNAE PINRPPTTTAKPPTPAPLPHNRXXXXXXPVRGVAAAALLPQLFGQALHNQSKFSGLQMSQDIDHNAAAASLFSHAIQGGGSGGGGGGQNQLADTAGAIAA EPNFNAVLWGRSAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	0	1
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	2.4	0.9473
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	3.6	0.9617
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	6.7	0.9391
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	7.1	0.9539
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	7.7	0.9365
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	10.2	0.9536
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	11.7	0.9517
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10017212 [exp]	11.8	0.9448
AT1G71870			MATE efflux family protein (.1...		Lus10038987 [exp]	12.0	0.9271
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	12.8	0.9438

Compare expression of checked genes

Lus10030040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.