Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 523 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 520 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 504 / 1e-176 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 182 / 4e-53 Eukaryotic aspartyl protease family protein (.1) AT1G69100 151 / 2e-41 Eukaryotic aspartyl protease family protein (.1) AT3G50050 64 / 1e-10 Eukaryotic aspartyl protease family protein (.1) AT3G54400 50 / 1e-06 Eukaryotic aspartyl protease family protein (.1) AT2G23945 50 / 3e-06 Eukaryotic aspartyl protease family protein (.1) AT3G20015 46 / 3e-05 Eukaryotic aspartyl protease family protein (.1) AT5G43100 45 / 8e-05 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035285 [exp] 796 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 524 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 523 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10022957 [exp] 518 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 502 / 8e-176 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 446 / 8e-155 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 346 / 7e-114 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10024792 [exp] 47 / 2e-05 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 47 / 3e-05 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 544 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 532 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 525 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 479 / 3e-166 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 455 / 9e-157 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 431 / 6e-149 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 416 / 4e-142 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 54 / 1e-07 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 51 / 1e-06 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 49 / 5e-06 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1 CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10030041 pacid=23159870 polypeptide=Lus10030041 locus=Lus10030041.g ID=Lus10030041.BGIv1.0 annot-version=v1.0 ATGGGTACTGAACTAAAAGCAGCTTGGATGATCCTCCTCCTTCTATTCATCTTCCCGGCGATGATTTCCGGCAGCAACGGCCAGCTCGTGAGAATCCCGG TGAAGAAGCGGAAGCTGGATAATCATCTCGATCACCCTCCGACGGCGAAGAAGTACGAACTTGGAAACGACGTCGTTGTGGACCTGAACAACTACTTGGA CTCTCAGTACTACGGCGAGATTGGAATTGGGTCTCCTCCCCAGACATTCAAAGTGGTGTTTGATACGGGAAGTTCGAATCTTTGGGTTCCTTCTGTGAAG TGCCACTTGTCTCTTGCTTGCTTTATCCATTCCAGATACAAGTCCAGTCGTTCCAGCACGTACAACAAGAATGGCATTCGATCCGGTCCCAACGAAAAGT GTGTTCTTTTCGATGCAGGTACCTCTGCTAAAATAAGCTATGGAAGCGGTTTAATCACTGGATTCTTTAGCCAGGACAGTGTCACAGTTGGGGATATTGT AGTGGAGAATCAGGATTTCATAGAGGTGACAAAAGAGCCAATCGCCACGTTCCTGGCTGCAAAGTTCGATGGCATCCTCGGGCTTGGATTCCAAGAAATC TCTGTTGAAAACGCTGTTCCACTTTGGTACAGCATGGTTGATCAAGACCTCGTGAAAAACCCGATCTTTTCGTTCTGGTTGAACCGAAATGCTGAAGGCG AGGAAGGAGGAGAGATTGTGTTTGGTGGAGTTGATTCTGATCATTACAAGGGGAAGCACACTTTTGTTCCTCTTACTCAAAAGGGCTATTGGCAGTTTGA TATTGGTGATGTGTGGATAGGAAATCAATCTGTTTCAGGAAACTGTGCCGGTTCCTGCAGTGCAATTGCTGATTCCGGGACTTCAATGTTGGCTGGTCCA ATGGTACTGCCACATGAAATCTGTTCTCAGATAGGAATCTGCCTTGTGGATGGGAATCACAGTGTCAGTATGGACATAAAGAGCGTCGTGGACCAGACGA AAACTGATGGCTTGGACAACGCGCTGTGCACTGCATGTGAGATGGCAGTCGTGTGGATCGAGAACCGGCTCAAACTAAACGAAACGGCTGAACAGATTCT TAAATACATCGATGAGGCAAATGCACAGTCGGCTGTCGAATGTAGTAGTATCCCTTCGTTGCCTGTCGTCTCGTTCACCATCGGTGGCAAGGACTTTGAC CTTTCTCCGGAAGAGTACATCCTTAAAGTAGGGAATGGAATTACAGCTCAGTGTATTAGCGGGTTCTCTGCTTTCGACGTGCCTCCTCCTCGCGGCCCTC TATGGGTTCTGGGAGATGCTTTCATGGGACGTTACCACACGGTGTTTGACTACGAAAACTTGAAAATCGGATTCGCTTTAGCCGCTTAG
AA sequence Show only first row Show all	>Lus10030041 pacid=23159870 polypeptide=Lus10030041 locus=Lus10030041.g ID=Lus10030041.BGIv1.0 annot-version=v1.0 MGTELKAAWMILLLLFIFPAMISGSNGQLVRIPVKKRKLDNHLDHPPTAKKYELGNDVVVDLNNYLDSQYYGEIGIGSPPQTFKVVFDTGSSNLWVPSVK CHLSLACFIHSRYKSSRSSTYNKNGIRSGPNEKCVLFDAGTSAKISYGSGLITGFFSQDSVTVGDIVVENQDFIEVTKEPIATFLAAKFDGILGLGFQEI SVENAVPLWYSMVDQDLVKNPIFSFWLNRNAEGEEGGEIVFGGVDSDHYKGKHTFVPLTQKGYWQFDIGDVWIGNQSVSGNCAGSCSAIADSGTSMLAGP MVLPHEICSQIGICLVDGNHSVSMDIKSVVDQTKTDGLDNALCTACEMAVVWIENRLKLNETAEQILKYIDEANAQSAVECSSIPSLPVVSFTIGGKDFD LSPEEYILKVGNGITAQCISGFSAFDVPPPRGPLWVLGDAFMGRYHTVFDYENLKIGFALAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	0	1
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	6.5	0.6675
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	11.7	0.6270
AT4G30780			unknown protein		Lus10007704 [exp]	14.8	0.6177
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	17.0	0.6353
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	38.1	0.5797
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	43.6	0.5589
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	61.1	0.5875
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10026408 [exp]	66.6	0.5550
AT5G55380			MBOAT (membrane bound O-acyl t...		Lus10003655 [exp]	76.8	0.4974
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10026618 [exp]	96.9	0.5273

Compare expression of checked genes

Lus10030041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.