Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32510 320 / 1e-106 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 296 / 7e-98 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT5G55090 289 / 1e-93 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 268 / 1e-85 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G07150 219 / 4e-66 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 204 / 6e-61 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT5G67080 191 / 5e-57 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G50310 188 / 4e-56 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 185 / 7e-55 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G09000 180 / 4e-50 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035284 [exp] 689 / 0 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 362 / 6e-121 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10021551 [exp] 268 / 7e-85 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10022951 [exp] 263 / 2e-83 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10012668 [exp] 185 / 1e-54 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10014976 [exp] 182 / 2e-50 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10019340 [exp] 169 / 1e-48 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10010519 [exp] 175 / 2e-48 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 174 / 3e-48 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155000 [exp] 349 / 1e-118 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.002G228200 [exp] 348 / 3e-117 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.011G007400 [exp] 321 / 1e-105 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 302 / 2e-98 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G073200 [exp] 226 / 1e-68 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 216 / 2e-65 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.003G130000 [exp] 211 / 8e-65 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.007G044800 [exp] 205 / 2e-62 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 201 / 6e-61 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 199 / 4e-60 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030042 pacid=23159678 polypeptide=Lus10030042 locus=Lus10030042.g ID=Lus10030042.BGIv1.0 annot-version=v1.0 ATGAGCTGGACTAGAGGTCACAAACTTGGCCACGGCTCCACCGCCACCGTCTACTTGGCAACCGCCAACCGCTCCGGCGAACAATTCGCCGTCAAGTCAG CCGAGCTCTCCCAATCGGAATTCCTCCAGAGGGAACAGAGGATTCTCTCTTCAATCTCATCTCCTTACATAATCGGATACAGAGGATGCGAAATTACAAA AGAGGAAAGCGACAGAGTTTTCTACAATCTGTTGCTCGACTACATCCCCGGCGGGACGATCATCGACGAGATTCACCGGCGGGAAATCGTCGGCGGCCGG ATGGGAGAGTCGACGATCGGATCGTACACGTGGCATATCGTCAAGGCGCTTGAGCATCTACATTCCAACGGAATTGTGCATTGCGATGTTAAAGGTAGAA ATATTCTGGTCGGACCGGGTGAGTCTGCCAAGCTTGCTGATTTCGGGTGCTCCAAGCGGGTCGGGTCAACGACGGCGGTGATCGCCGGGACGCCGATGTT TATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAGGGTTTAGCCGGAGACTTATGGGGGCTGGGTTGCGCGGTGATCGAAATGGCGACCGGCGGCGGTTCG CCGTGGTCGGAAACGGAGGTTGCCGACGACCCTTTTTCGGCGATTTACCGGGTGGGTTATTCGGACCGCGTGCCGGAGTTTCCGGGTTGGTTTTCCGAGC AAGGAAAGGATTTCTTGGATAAGTGTCTAAAGAGGGATCCGAATCAGAGGTGGACGGCAAGTCAGCTCCTGAATCATCCATTTCTAGCAAAATTCGACGA TTTGAGTCTGGAATCACCGGAATCTTTGGCGAAGATTCCATCTTTCGATTCCCCGACGAGCATTCTGGATAACGGGTTCTGGAATTCGGTGGTTTCGGAC TCGGAGGAAGCTTCTTCTTCATCATCATCATCGTCGGAGGATGAAGAAGAAGAAGATGAAGCAGAGGCGAGAGGGAGGATCGGACGGCTGGGGATGGAGG CTTCTGTGGGACCCAGTTGGGATGAAGATGATTGTGGCCGTTGGATCACGGTGAGGGAGAATAGTGAAGAAGAGGATTGGGTAATGGAGGAGTCATTAGA GAGTGATTATAGTGTAATTAGTAGACGTGTAGGGGTTAGTTTGGGAGGGTGTAAATATGAGAAAATTGGTAGTTTTGGTGGAGTACTTAGTTGTAATTTG GGGTTTGAGAGGGCGAGGCAAGATGGAGATGTGTCATCATTGTCACTAATTGCTTCACAAGCTTATTAG
AA sequence Show only first row Show all	>Lus10030042 pacid=23159678 polypeptide=Lus10030042 locus=Lus10030042.g ID=Lus10030042.BGIv1.0 annot-version=v1.0 MSWTRGHKLGHGSTATVYLATANRSGEQFAVKSAELSQSEFLQREQRILSSISSPYIIGYRGCEITKEESDRVFYNLLLDYIPGGTIIDEIHRREIVGGR MGESTIGSYTWHIVKALEHLHSNGIVHCDVKGRNILVGPGESAKLADFGCSKRVGSTTAVIAGTPMFMAPEVARGEEQGLAGDLWGLGCAVIEMATGGGS PWSETEVADDPFSAIYRVGYSDRVPEFPGWFSEQGKDFLDKCLKRDPNQRWTASQLLNHPFLAKFDDLSLESPESLAKIPSFDSPTSILDNGFWNSVVSD SEEASSSSSSSSEDEEEEDEAEARGRIGRLGMEASVGPSWDEDDCGRWITVRENSEEEDWVMEESLESDYSVISRRVGVSLGGCKYEKIGSFGGVLSCNL GFERARQDGDVSSLSLIASQAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	0	1
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	4.6	0.8284
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	5.2	0.8177
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	8.4	0.8230
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	8.9	0.7401
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	13.8	0.7971
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	13.8	0.7658
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	14.5	0.8093
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	14.8	0.8170
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	15.5	0.7891
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	19.1	0.8149

Compare expression of checked genes

Lus10030042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.