Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05120 998 / 0 Helicase protein with RING/U-box domain (.1) AT1G02670 444 / 4e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43530 288 / 4e-81 Helicase protein with RING/U-box domain (.1) AT5G22750 285 / 5e-81 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G61140 272 / 5e-76 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 270 / 8e-76 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 258 / 1e-71 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G05130 218 / 7e-59 DNA/RNA helicase protein (.1) AT3G16600 135 / 2e-32 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 135 / 4e-32 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011211 [exp] 295 / 2e-83 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10043365 [exp] 282 / 1e-79 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 282 / 1e-79 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041008 [exp] 267 / 6e-75 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 260 / 3e-71 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10039001 [exp] 225 / 4e-61 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10018465 [exp] 211 / 6e-56 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10027296 [exp] 158 / 1e-41 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 129 / 2e-33 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G154600 [exp] 1108 / 0 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 296 / 1e-84 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 283 / 8e-81 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 269 / 1e-75 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 250 / 3e-68 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 247 / 3e-67 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.006G035700 [exp] 211 / 3e-56 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 177 / 2e-45 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 174 / 2e-44 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 171 / 2e-43 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030044 pacid=23159764 polypeptide=Lus10030044 locus=Lus10030044.g ID=Lus10030044.BGIv1.0 annot-version=v1.0 ATGAAGCTTCGCTCTCGTAAAATAGCCGCCAAGATTCAGAATTACGATGACGGTTCTGTGGATGAAGTGAGTGATTTAGCGGGAGAAGCTGATGATATCA TTCATTTGACTGACGATGGCTCGGACGAGGAAATCTATGTGCCTTCAGATGATTCTGATCATAATAGCTCTGACAGTGAAGGTTCAGCGAAGGAGGTAAC TCTTGATTTTGGTTTGAAGCACAAAGCAAAGGCCAAGGTTGACATCCGTGATGGACAAGAGGACTTTGCTTCTTCCAGCAATCCTACTTCTACTCATGGT GATCATGCAGAGGCCTCTCTAGGTCCGATCGATGATCCTGCAGTATCTTTGAATCTGTCATTGGCAATACCTCAAATCAGTGATGAAGAAGAACAAAGAA GGGAAGTGAATTATGGGGCAAGAAAAAGGAAATACAAATCAGGGAGTAAGAAGAAAAGAGATGCATCAGCACCGCCTCTTCTGTGGGAAGTATGGGAGGA AGCGCATGAGAAATGGCTCGATGAAAATTCCAAAGTGGACGTGGATTTGGATCAGCAAAATGGTTTTGTGGCTGAAGTTGCTGAGGCACCATCAGAATTG ATCATACCTTTGTTAAGGTATCAGACGGAATGGCTGGCTTGGGCTTCAAAACAGGAAGACTCTGAAACTAGAGGGGGGATTCTTGCTGATGAGATGGGGA TGGGGAAGACTATTCAAGCGATCTCCCTTGTACTTCTTCGAAGAGCGATGCGACAAAAAATTTCTGCACTTGGAATTTCAACATCTGGTTCAAGCGATGA TTCATCTAGGATCAAGACTACCCTTGTTATTTGTCCTGTGGTCGCTGTAACTCAGTGGGTTACTGAGATTGACCGTTTTACTACTAAAGGAAGTATCAAG GTTCTGGTTTATCATGGAGCAAATAGAGGAAAAAACTCAAAGAAGTTTGCAGATTATGACTTTATTATTACCACATATAGTATCGTTGAGGCTGAATTCA GAAAGTATATGATGCCACCCAAGAACAAATGCATGTACTGTCAAAAGGCATTTCAGGGGAATAAGTTGTGGGTACATCTTAAATACTTCTGTGGTCCTGA TGCCATGAAAACTTCAAAGCAGTCTAAGCAACAGAAGAAAACACTCAAAGCTCAACAGACAGAAGACTTACCAGAAAGTGATTTGGATGCATTCGACAGT AAATCCACTCCAACTTATCAGGGGAAAGGGCATTGGAAGAAGACATCTACAGCGGAAAATGACGATCTTGATCTGACATTGGCTAAGAAAAAGTCGATTC TGCATTCAGTGAATTGGGAGCGTATAATATTGGATGAGGCCCATTTTATAAAAGATAGACGTTGCAATACTGCAAAGGCTGTTTTTGCGTTGGATTCTTC TTTCAAGTGGGCACTTAGTGGCACCCCCCTTCAGAACCGTGTCGGAGAACTATACTCGTTGGTACGATTCCTACAGATTGTACCATATTCATATTACTTG TGTAAAGATTGCGATTGCAGAACTCTTGATTATGGGTACGATTCGGGTCTTAAAGGACTTTTCAACTGTTCAAAACAACATTGCTCTGGCTGTGAACACA GTACCGTGAGACACTTTTGTTGGTGGAATAAGTACATTTCTAACCCAATACAATCCTACGGAAATTCTGATGCGGGGAGGAGGGCTATGATATTGCTGAA ACATAAAGTCCTTAAGAAGATAGTACTAAGGCGGACCAAAAAAGGTCGAGCTGCTGATCTTGCTCTTCCTCCTAGAATTGTCAAATTGAGGCGAGATACA CTGGGCGTCAAGGAAGAAGATTACTATGAGTCGTTATACAATGAGAGTCGGGCACAGTTTAATACATATATTGACGCTGGGACGGTGATGAATAATTATG CACATATATTTGACCTCCTCACTCGTTTGCGCCAGGCAGTTGATCATCCATACCTTGTGGTCTACTCTGCAACTGCAGTTCAAAGGCAGGAGAACACTTT TAATGAAAATGTTGTCGAACAAATTTGTGGTGTTTGTCACGATCCGGCAGATGATCCTGTGGTGAGCTCCTGTGAACATGTCTTCTGCAAAGCATGCTTG CTTGATTATTCTGCTTCATTGGGGCAAGCCTTGTGTCCTACGTGCTCAAAACCACTCACTGTGGACTTCACCTCAAAGACTTACGGTGATTCTCAATCTC GGAAAACAACCGTCAAGGGATTCAGAGCTGCTAGTATCCTTAACAGAATAAAACTGAATGATTTCCAGACGAGCACAAAGATAGAGGCTTTGAGGGAGGA AATCCGAGATATGGTTGAAAGGGACGGTTCAGCAAAAGGAATTGTCTTCAGCCAGTTCACCTCGTTTCTGGATCTCATCCACTACTCTCTCATTAAGTCT GGTGTAAACTGCGTCCAACTAGTGGGGAGCATGACTCTACAACAAAGAGATGCTGCTATAAAGAAATTTACAGATGATCCAGACTGCAAGATCTTTCTAA TGAGTTTGAAAGCCGGAGGTGTCGCTCTTAATCTCACCGTAGCATCCAATGTTTTCTTGATGGATCCTTGGTGGAACCCGGCAGTCGAGCGTCAAGCTCA AGATAGGATCCACCGCATTGGACAGTACAAGCCTATTAGGATCGTCCGATTCATCATTGAGAACACAGTCGAGGAGAGGATTCTGCAGCTACAGGAGAAG AAAGAGCTTGTCTTTGAGGGGACGGTTGGTGGCTCGTCGGAAGCGCTCGGGAAGCTGACGGAGGCTGATCTAAGGGCTGCGAGCTCGAGCATCTATTTGC GCGGAGGCGAATGCCCTCATTGCAGCAATAGATTTAGCCTTGAGGGGACAACTTCAAACTTTCATTTTGACAAATTGTCTTGTGCTTGTTCGAGCTCTAG AAGAGCAGCCACGTTGCCGGCCTTAAGAAGCAGCTCTATTGATTGCTGTTCTCAATCAAAGCTTACTGGAGCAGACAGATCAAGTTACCACAAGTCATCA CGGGAGGGATGGTGTTTCGCAAGTGGACCGGATCGCGAGAATAGCGCGCGACTGACTGTTTACCAGCTAACTTGTTAG
AA sequence Show only first row Show all	>Lus10030044 pacid=23159764 polypeptide=Lus10030044 locus=Lus10030044.g ID=Lus10030044.BGIv1.0 annot-version=v1.0 MKLRSRKIAAKIQNYDDGSVDEVSDLAGEADDIIHLTDDGSDEEIYVPSDDSDHNSSDSEGSAKEVTLDFGLKHKAKAKVDIRDGQEDFASSSNPTSTHG DHAEASLGPIDDPAVSLNLSLAIPQISDEEEQRREVNYGARKRKYKSGSKKKRDASAPPLLWEVWEEAHEKWLDENSKVDVDLDQQNGFVAEVAEAPSEL IIPLLRYQTEWLAWASKQEDSETRGGILADEMGMGKTIQAISLVLLRRAMRQKISALGISTSGSSDDSSRIKTTLVICPVVAVTQWVTEIDRFTTKGSIK VLVYHGANRGKNSKKFADYDFIITTYSIVEAEFRKYMMPPKNKCMYCQKAFQGNKLWVHLKYFCGPDAMKTSKQSKQQKKTLKAQQTEDLPESDLDAFDS KSTPTYQGKGHWKKTSTAENDDLDLTLAKKKSILHSVNWERIILDEAHFIKDRRCNTAKAVFALDSSFKWALSGTPLQNRVGELYSLVRFLQIVPYSYYL CKDCDCRTLDYGYDSGLKGLFNCSKQHCSGCEHSTVRHFCWWNKYISNPIQSYGNSDAGRRAMILLKHKVLKKIVLRRTKKGRAADLALPPRIVKLRRDT LGVKEEDYYESLYNESRAQFNTYIDAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSATAVQRQENTFNENVVEQICGVCHDPADDPVVSSCEHVFCKACL LDYSASLGQALCPTCSKPLTVDFTSKTYGDSQSRKTTVKGFRAASILNRIKLNDFQTSTKIEALREEIRDMVERDGSAKGIVFSQFTSFLDLIHYSLIKS GVNCVQLVGSMTLQQRDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASNVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFIIENTVEERILQLQEK KELVFEGTVGGSSEALGKLTEADLRAASSSIYLRGGECPHCSNRFSLEGTTSNFHFDKLSCACSSSRRAATLPALRSSSIDCCSQSKLTGADRSSYHKSS REGWCFASGPDRENSARLTVYQLTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05120			Helicase protein with RING/U-b...		Lus10030044 [exp]	0	1
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	9.9	0.8614
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	14.8	0.8393
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	20.8	0.8521
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	26.9	0.8447
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	28.7	0.7499
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	30.9	0.8362
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	32.2	0.8317
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	36.0	0.8086
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	37.7	0.8081
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	48.7	0.8313

Compare expression of checked genes

Lus10030044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.