Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04090 159 / 4e-48 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1) AT5G18290 151 / 4e-45 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT3G56950 72 / 7e-15 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT2G25810 49 / 6e-07 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT2G16850 49 / 1e-06 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT1G73190 48 / 1e-06 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 47 / 4e-06 BETA-TIP beta-tonoplast intrinsic protein (.1) AT2G36830 46 / 7e-06 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT2G37170 46 / 1e-05 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT4G01470 46 / 1e-05 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035281 [exp] 396 / 2e-141 AT3G04090 176 / 9e-55 small and basic intrinsic protein 1A (.1) Lus10021989 [exp] 149 / 1e-40 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038989 [exp] 89 / 4e-21 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10027275 [exp] 85 / 1e-19 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10035395 [exp] 86 / 8e-19 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 76 / 1e-15 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10021510 [exp] 49 / 1e-06 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10005885 [exp] 49 / 1e-06 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10022611 [exp] 49 / 1e-06 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227500 [exp] 258 / 3e-87 AT5G18290 165 / 2e-50 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.014G154400 [exp] 257 / 1e-86 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.013G053400 [exp] 204 / 8e-66 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.019G030900 [exp] 195 / 2e-62 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1) Potri.006G027200 [exp] 92 / 4e-22 AT3G56950 264 / 1e-89 small and basic intrinsic protein 2;1 (.1.2) Potri.016G024900 [exp] 90 / 2e-21 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.001G235300 [exp] 51 / 2e-07 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 50 / 3e-07 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.003G108500 [exp] 48 / 2e-06 AT3G47440 320 / 5e-111 tonoplast intrinsic protein 5;1 (.1) Potri.006G239700 [exp] 48 / 2e-06 AT2G25810 355 / 5e-125 tonoplast intrinsic protein 4;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10030046 pacid=23159657 polypeptide=Lus10030046 locus=Lus10030046.g ID=Lus10030046.BGIv1.0 annot-version=v1.0 ATGGGGCTAATCAAGTCAGCAGCCGGAGACTTCATCCTGACCACGATGTGGGTATTCTCCGTCCCACTCCTCATAATCTCCTCCGCATGCGTCTCCTCTT CCCTCGGCGCCGAGCCCAAATCCCTAGCCTCCCTCTTCATCACCGTCAACGTCGCCGCCGTCTTCGTCCTCTTCTTCTCCACAATCGGCGCCCTCCTCGG CGGCGCGAGCTTCAACCCAACCACCACCGTCACCTTCTACGCTGCAGGCCTCAAACCGGACATCTCCCTCATCTCCCTCGCTTCCCGGTTCCCGATCCAG GCCGCCGGCGGCGTACTCGGCGCTAAAGCGATCCGACAACTCCTCCTCCCGACGAGGTTCCGCCACGTCATCGGAGGGCCGTCGCTGAAAGTGGATCTCC ACACGGGAGCGGCCGCCGGAGCAGGTTTGAGCTTCCTGCTCTGTTTATCTCTGCTTTCGATTATGGTCAAAGGTCCGAGGAATTCCCTGGTCAAAGTCTG GATGCTGGCCGTGGTGACCGTTGGATTGATCTTCGCCGGAGGGAAGTTCACCGGTCCGTCTATGAACCCTGCGAATGCTTACGGATGGGCTTATGTGAAC GATCGGCATCAGAATTGGGATTTGTTCTATGTTTACTGGGTTTCTCCCATCATTGGCGCCATTGTTGCTGCTTCAGTGTTCAAGCTCTTGTTCAAGAGCT CTCCTCCTCCCCCTTCCAAGCCGAAGGCCGAGTGA
AA sequence Show only first row Show all	>Lus10030046 pacid=23159657 polypeptide=Lus10030046 locus=Lus10030046.g ID=Lus10030046.BGIv1.0 annot-version=v1.0 MGLIKSAAGDFILTTMWVFSVPLLIISSACVSSSLGAEPKSLASLFITVNVAAVFVLFFSTIGALLGGASFNPTTTVTFYAAGLKPDISLISLASRFPIQ AAGGVLGAKAIRQLLLPTRFRHVIGGPSLKVDLHTGAAAGAGLSFLLCLSLLSIMVKGPRNSLVKVWMLAVVTVGLIFAGGKFTGPSMNPANAYGWAYVN DRHQNWDLFYVYWVSPIIGAIVAASVFKLLFKSSPPPPSKPKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	0	1
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	2.2	0.9131
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	2.4	0.9274
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	3.2	0.8970
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	4.4	0.9282
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	6.2	0.8892
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	7.1	0.9245
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	7.5	0.8891
AT3G54200			Late embryogenesis abundant (L...		Lus10018185 [exp]	7.7	0.8755
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	9.4	0.9072
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	9.8	0.9162

Compare expression of checked genes

Lus10030046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.