Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 235 / 1e-78 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 234 / 2e-78 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 233 / 5e-78 RmlC-like cupins superfamily protein (.1) AT5G39110 231 / 7e-77 RmlC-like cupins superfamily protein (.1) AT3G05950 231 / 8e-77 RmlC-like cupins superfamily protein (.1) AT5G39150 228 / 8e-76 RmlC-like cupins superfamily protein (.1) AT5G39180 226 / 3e-75 RmlC-like cupins superfamily protein (.1) AT5G39120 226 / 3e-75 RmlC-like cupins superfamily protein (.1) AT4G14630 216 / 4e-71 GLP9 germin-like protein 9 (.1) AT5G38910 214 / 3e-70 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035279 [exp] 400 / 9e-144 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10026962 [exp] 390 / 9e-140 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 368 / 3e-131 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10029010 [exp] 367 / 2e-130 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 365 / 3e-130 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 315 / 3e-110 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 314 / 1e-109 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 309 / 6e-108 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 309 / 1e-107 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 294 / 5e-102 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 294 / 5e-102 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 290 / 2e-100 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 289 / 4e-100 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 289 / 6e-100 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 281 / 6e-97 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 276 / 5e-95 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 276 / 9e-95 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 275 / 1e-94 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.013G052000 [exp] 253 / 1e-85 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10030048 pacid=23159872 polypeptide=Lus10030048 locus=Lus10030048.g ID=Lus10030048.BGIv1.0 annot-version=v1.0 ATGTCAAATCAGTATGCTATGTCGACCTTATTGCTAGCGGTAGCTCTCGCGTTTTGTTATCTCGCCTCTGCTGCTGATCCTTCTCCCCTCCAGGACTTCT GTGTGGCCGATTCGTCTAACCAAGTGAGAATGAATGGATTCGCTTGCAAGAATCCTGCAACGGTCCAGGCGAGCGATTTCTCCTTCAACGGGCTCCACAA CCCCGGGAACACAGCCAATGCCGTGGGATCTATAGTGACCCCAGTGACAGTGGCCCAGATTCCTGGACTTAACACATTGGGAATCTCGATGGTGCGTATC GACTATGCTCCATGGGGAGTTGGTTCTCCTCACACTCATCCACGGGCCAGCGAGGTACTGACAGTCATTGAGGGCACTTTGGAAGTTGGATTCGTCACGT CGAACCCGGAGAATCGTCTCATTTCCAAGATCCTTCAGAAGGGTGATGTGTTTGTGTTTCCGATTGGGTTGATTCACTTCCAACGTAATGTTGGAAACGG GAATGCGGTAGCTATTGCCGCCTTGAGCAGCCAGAACCCGGGAGTCATCACCATTGCCAACTCCGTATTTGGCTCGAAGCCTGATATTGCGACCGATATT CTCACCAAGGCATTCCAGGTGGATAAGAGCATCATTGAGAAGCTCCAATGGAATTTCTAG
AA sequence Show only first row Show all	>Lus10030048 pacid=23159872 polypeptide=Lus10030048 locus=Lus10030048.g ID=Lus10030048.BGIv1.0 annot-version=v1.0 MSNQYAMSTLLLAVALAFCYLASAADPSPLQDFCVADSSNQVRMNGFACKNPATVQASDFSFNGLHNPGNTANAVGSIVTPVTVAQIPGLNTLGISMVRI DYAPWGVGSPHTHPRASEVLTVIEGTLEVGFVTSNPENRLISKILQKGDVFVFPIGLIHFQRNVGNGNAVAIAALSSQNPGVITIANSVFGSKPDIATDI LTKAFQVDKSIIEKLQWNF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10030048 [exp]	0	1

Compare expression of checked genes

Lus10030048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.