Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 191 / 7e-62 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 191 / 1e-61 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 190 / 2e-61 RmlC-like cupins superfamily protein (.1) AT3G05950 189 / 7e-61 RmlC-like cupins superfamily protein (.1) AT5G39110 187 / 4e-60 RmlC-like cupins superfamily protein (.1) AT5G39150 183 / 1e-58 RmlC-like cupins superfamily protein (.1) AT5G39120 182 / 2e-58 RmlC-like cupins superfamily protein (.1) AT5G39180 181 / 5e-58 RmlC-like cupins superfamily protein (.1) AT4G14630 179 / 5e-57 GLP9 germin-like protein 9 (.1) AT5G38940 179 / 8e-57 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035278 [exp] 348 / 7e-124 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 324 / 4e-114 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 319 / 2e-112 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 313 / 1e-109 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 302 / 2e-105 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 298 / 4e-104 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 273 / 6e-94 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 270 / 6e-93 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 264 / 2e-90 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 250 / 4e-85 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 250 / 4e-85 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 250 / 5e-85 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 249 / 1e-84 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 246 / 2e-83 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 234 / 1e-78 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 233 / 2e-78 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 225 / 4e-75 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 223 / 2e-74 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 208 / 2e-68 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10030049 pacid=23159797 polypeptide=Lus10030049 locus=Lus10030049.g ID=Lus10030049.BGIv1.0 annot-version=v1.0 ATGGCGAATCAAGCTGTTATGTTTGTAACCTTCTTGCTAGGAGTAGCTCTCACGTTCTGCTATCTCGCCTCAGCGTCCGATCCTTCGCCCCTTCAGGACT TCTGCGTTGCAGATTCGAGCAATCAAGTCAAAATAAACGGCTTCGCTTGCAAGGATCCTGCGACTGCCCAGGCGAGCGATTTCTCCTTCAGCGGGCTCCA CAACCCTGGGAACACAGGCAATGCAGTGGGATCTGTTGTGACCCCGGTTACGGTGGCTCAAATACCCGGGCTCAACACATTTGGAATCTCGATGGGCACT CTGGAAGTAGGGTTCGTCACGTCGAATCCCGAAAATCGTCTCATTTCCAAAGTACTTCAGAAGGGTGACGTGTTTGTGTTCCCGATTGGGTTGGTTCACT TCCAACGTAATGTTGGATATGGGAATGCAGTGGCTATTGCTGCCTTGAGCAGCCAGAACCCCGGAGTTATTACTGTTGCCAACTCTGTGTTCGGATCGAA GCCTGACATTGCCACCGACATTCTTGCCAAGGCGTTCCAGGTCGACCAAGGCATTGTTCAACAAATCAAGTGGAAATTCTAG
AA sequence Show only first row Show all	>Lus10030049 pacid=23159797 polypeptide=Lus10030049 locus=Lus10030049.g ID=Lus10030049.BGIv1.0 annot-version=v1.0 MANQAVMFVTFLLGVALTFCYLASASDPSPLQDFCVADSSNQVKINGFACKDPATAQASDFSFSGLHNPGNTGNAVGSVVTPVTVAQIPGLNTFGISMGT LEVGFVTSNPENRLISKVLQKGDVFVFPIGLVHFQRNVGYGNAVAIAALSSQNPGVITVANSVFGSKPDIATDILAKAFQVDQGIVQQIKWKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10030049 [exp]	0	1

Compare expression of checked genes

Lus10030049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.