Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26700 511 / 5e-178 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G47750 397 / 2e-132 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 386 / 1e-129 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 383 / 2e-128 D6PK D6 protein kinase (.1) AT5G40030 380 / 5e-127 Protein kinase superfamily protein (.1) AT5G03640 391 / 2e-126 Protein kinase superfamily protein (.1) AT2G34650 372 / 1e-124 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT3G52890 384 / 1e-123 KIPK KCBP-interacting protein kinase (.1.2) AT2G44830 375 / 5e-122 Protein kinase superfamily protein (.1) AT2G36350 374 / 1e-119 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033029 [exp] 808 / 0 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10016629 [exp] 395 / 9e-132 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 388 / 2e-128 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10039105 [exp] 384 / 1e-127 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 384 / 2e-127 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 380 / 3e-127 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 387 / 6e-125 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 386 / 9e-125 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10032185 [exp] 372 / 1e-123 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093400 [exp] 605 / 0 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.016G004900 [exp] 392 / 2e-130 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 389 / 4e-129 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 389 / 2e-128 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 390 / 3e-128 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 390 / 3e-128 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 381 / 2e-127 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 387 / 1e-124 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 377 / 7e-122 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 375 / 2e-121 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030051 pacid=23172549 polypeptide=Lus10030051 locus=Lus10030051.g ID=Lus10030051.BGIv1.0 annot-version=v1.0 ATGGCATCCATAGCTCCTCGAGATGAATCCGACTACGACAGCAGCTCGTCCTCCATCACCGTCCCAGACTCTAGCCGGAGCTGGATGAGTAACCTCAGCT TCGGCAGCCGGCGAAGTTCTATCTCCATCACTTCCTCTTTAGCCGAATCACAACACCCACTCCTTTACACTTCCCACAAGCCCCACAAGTCCAACCAAGC TGCCTGGCAGGCCATTAAGCGCCTCCAGGCTGCCGGAGGATATGGCCGCGGTGTCGGTCTAGACCATTTCCGCCTCCTCCGCCGACTGGGGAGTGGGGAT TTGGGTAATGTCTACCTCTGCCAGATAAGGAACCCTGTTGTGGGTCTGCCTCAGTGTTTCTATGCCATGAAAGTTGTGGACAAAGAAGCGCTTGCTATTA GAAACAAGGTGCAGAGAGCTGATATGGAGAAGGAGATTTTGGGGATGCTTGATCACCCTTTTCTTCCTACTCTCTATGCTGAGTTTGAAGCTTCTCATTA CTCCTGCTTGGTTATGGAGTATTGTCCCGGCGGTGATTTGTACGCCGCCAGGCAACGCCAGCCTGGGAAGCGCTTCCCCATTTCCTCCGCCAAGTTTTAT GTAGCGGAAACATTAGTGGCGTTGGAATATCTACATATGATGGGAATAGTTTACAGAGATCTGAAGCCAGAGAACGTACTTGTTAGAGAAGATGGCCACA TCATGCTCTCCGATTTCGACCTCTGCCTCAAATGTGACGTTGTTCCCAAGCTCTTACGCCGGCCCAAATCCTCCGTCTCCGTCGACGACTATGATGAAGA AGACGACGACGAAATAGACGGCGGCAGCAGCAGTAATGGAAGAGAAGCATGCTTCACACCATCATGCGCCACGCCAATTCGGCCTGTCCTGTCCTGTTTC ACATCGAGAAAGAAACAGCGTTCAGTCAGGACAATCGTCGAACACGTGGAGTGCACTCAAAACAACACCCATCGTGGCCATCACAATCACCGTCGTCTCA ACCTGGAAGCGGAATTAATCGCCGAACCAATCAATGCCAGGTCGAAATCGTTTGTTGGAACGCACGAGTACTTAGCTCCGGAAGTGATCTCCGGGCAGGG CCACGGGAGCGCGGTGGACTGGTGGACCCTGGGGGTGTTTCTGTACGAGATGCTTTACGGGAGGACGCCGTTCAAGGGGGAAAACAACGAGAGGACGCTA ATTAACATCCTGAAACAGCCCTTGGCGTTTCCCAGAGTCGCCGGAGCCGTAACGGAGGAGATGTTGAGGGTTCAGGACCTGATAAGCAAGTTGCTGGTGA AGAATCCGAAGAAGAGGTTAGGGAGCTTAAAGGGTGCGGCGGAAATTAAGCGGCACGAGTTTTTCAAAGGGGTTAATTGGGCGCTGATTCGGTCGGTACG GCCTCCGGAGGTCCCGAGGGAGGGTCGCCGGAAAATAATGGACAGTCGAGTCCCGAAATTGATGAGCCGGAGGGAAAGGGAAGCGCCGTTTCAGATCCCG GCGGCTCGTGAGCATCATCAACATTTTGATTACTTTTAA
AA sequence Show only first row Show all	>Lus10030051 pacid=23172549 polypeptide=Lus10030051 locus=Lus10030051.g ID=Lus10030051.BGIv1.0 annot-version=v1.0 MASIAPRDESDYDSSSSSITVPDSSRSWMSNLSFGSRRSSISITSSLAESQHPLLYTSHKPHKSNQAAWQAIKRLQAAGGYGRGVGLDHFRLLRRLGSGD LGNVYLCQIRNPVVGLPQCFYAMKVVDKEALAIRNKVQRADMEKEILGMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFPISSAKFY VAETLVALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRRPKSSVSVDDYDEEDDDEIDGGSSSNGREACFTPSCATPIRPVLSCF TSRKKQRSVRTIVEHVECTQNNTHRGHHNHRRLNLEAELIAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGRTPFKGENNERTL INILKQPLAFPRVAGAVTEEMLRVQDLISKLLVKNPKKRLGSLKGAAEIKRHEFFKGVNWALIRSVRPPEVPREGRRKIMDSRVPKLMSRREREAPFQIP AAREHHQHFDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	0	1
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	2.4	0.8400
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	3.0	0.7952
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	4.9	0.8176
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10012421 [exp]	22.8	0.7445
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	23.5	0.7762
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	26.2	0.7122
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	31.9	0.7658
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	32.9	0.7752
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10009688 [exp]	41.5	0.7584
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	42.8	0.7545

Compare expression of checked genes

Lus10030051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.