Plant FIBer expression Database

Lus10030052 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25940 73 / 7e-18 early nodulin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033027
[exp]
162 / 2e-53 AT5G25940 69 / 2e-16 early nodulin-related (.1)
Lus10019434
[exp]
142 / 3e-45 AT5G25940 75 / 8e-19 early nodulin-related (.1)
Lus10043290
[exp]
140 / 1e-44 AT5G25940 76 / 3e-19 early nodulin-related (.1)
Lus10002236
[exp]
58 / 3e-12 AT5G25940 82 / 3e-21 early nodulin-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G184000
[exp]
143 / 1e-45 AT5G25940 74 / 4e-18 early nodulin-related (.1)
Potri.009G143800
[exp]
132 / 3e-41 AT5G25940 65 / 1e-14 early nodulin-related (.1)
Potri.019G033700
[exp]
80 / 2e-20 AT5G25940 68 / 1e-15 early nodulin-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03386 ENOD93 Early nodulin 93 ENOD93 protein
Representative CDS sequence
>Lus10030052 pacid=23172628 polypeptide=Lus10030052 locus=Lus10030052.g ID=Lus10030052.BGIv1.0 annot-version=v1.0
ATGGCAAAGAATGTGGCTCAATCGACTTGCAGCAGCAGCATGGCTTCACTTGACCAAAGGTTGGCAATGGCAAAGCGTTGTTCTCATGAGGGAGTGGTTG
CTGGAGCAAAGGCAGCAGTAGTTGCCAGCATAGCTGCTGCCATTCCAACACTTGCAAGTGCAAGGATGCTTCCATGGGCAAGAGCTAATCTCAATCACAC
TGCACAAGCTCTCATTATCTCCACAGTTGCTGGAGCAGCCTATTTTATTGTTGCTGACAAGACTGTCCTAGCTACAGCAAGAAAGAACTCATTCAAAGAT
ATTTCTAACAACTGA
AA sequence
>Lus10030052 pacid=23172628 polypeptide=Lus10030052 locus=Lus10030052.g ID=Lus10030052.BGIv1.0 annot-version=v1.0
MAKNVAQSTCSSSMASLDQRLAMAKRCSHEGVVAGAKAAVVASIAAAIPTLASARMLPWARANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFKD
ISNN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25940 early nodulin-related (.1) Lus10030052
[exp]
0 1
AT3G50390 Transducin/WD40 repeat-like su... Lus10016779
[exp]
1.4 0.9885
Lus10026740
[exp]
3.0 0.9757
AT3G48660 Protein of unknown function (D... Lus10003120
[exp]
3.0 0.9844
AT3G10920 MSD1, MEE33, AT... MATERNAL EFFECT EMBRYO ARREST ... Lus10030534
[exp]
3.2 0.9870
AT3G05550 Hypoxia-responsive family prot... Lus10033002
[exp]
3.5 0.9732
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Lus10038904
[exp]
4.0 0.9841
AT3G14880 unknown protein Lus10042453
[exp]
4.5 0.9755
AT3G59710 NAD(P)-binding Rossmann-fold s... Lus10034835
[exp]
4.9 0.9788
AT5G39890 Protein of unknown function (D... Lus10003861
[exp]
6.0 0.9805
Lus10002596
[exp]
6.3 0.9809

Lus10030052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.