Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 846 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 534 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 531 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 509 / 6e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 504 / 8e-170 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 496 / 7e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 491 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 483 / 1e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 484 / 3e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 481 / 4e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033026 [exp] 1296 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 543 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 535 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 533 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 524 / 3e-177 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 520 / 4e-177 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 518 / 9e-175 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 513 / 2e-174 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 510 / 2e-173 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 1002 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 581 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 579 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 558 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 558 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 555 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 547 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 524 / 1e-178 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 521 / 1e-177 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 522 / 1e-175 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030053 pacid=23172609 polypeptide=Lus10030053 locus=Lus10030053.g ID=Lus10030053.BGIv1.0 annot-version=v1.0 ATGGCGGCGTTTTCTTCTCCACCTTCAATCGCAGTTTCCACCACAGCAATTTCCCATTTCCTTCCATTGTCAGATCCTCCGTACCAACTCCTTCAAAACC ACCCGTCGCTCGCTCTCCTCTCAACCTGCAAAAACCATCGAACTTTCAAGCAAATCCACTCTCTCGTCCTCAGAAGGGGCCTCCACAGCACCCAATTCTC CCTCAGCAAGCTCATCGAGTTCTGTGCAGTTTCTCCCTACGGAGACATGGCTTATTCCCTGTCACTCTTCGAGTCCGTCGAAAATCCTGATCAGATAATC TGGAACCATATCATCCGGGGATTCGCGTTGGGTGAATCCCCGATTCTTGCCGTGGAATTCTACATTCGGATGATGGTGTCAGGTTTGGAGCCAAATACGC ACACGTTCCCCTTCGTTCTCAAGTCCTGTGCGAAATCAGGGAACGCAAAAGAGGGTAAACAGATTCATGGCCATGTTCTGAAGCTGGGTGTTGAGAATGA TGCATTTGTTCACACTTCTTTGATTAATATGTATGCTCAGAATGGTGAACTGGATTTTGCACGATTAGTGTTTGAGAAAAGCCCTAGAAGAGATGTTATA TCGTGTACCGCTTTGATGAATGGCTACTGTTCGGGTGGGCTTATGGAAGAAGCCAGTAAGCTGTTCGACGAAATACCTATTAGAGATGTAGTGTCGTGGA ATGCTATGATTTCAGGCTATGTCCATAGTGGCTTATTTGAAGAGGCATTAGAATTCTTTGGTGAGATGGTTAGAGTGGGAATTACCCCGAATTCTTGGAT TGAGGATCACGGACTAGGATCAAATCTGAGGCTTCTTAACGGTCTTGTTGATATGTATGCTAAGTGTGGAGATCTCGAAAGAGCTAAGAGCATTTTCGAT AACATAGGAACCAAGAATGTGGTCTCATGGAATGTTATAATTGGCGGATATAACCATAAGGGCTGCTATAAGGAATCACTAGAGATCTTTAGGCAGATGC TGTTGTCAAATCTGGAGCCTAATGAGGTAACTTTGGTTAGTGTTCTTCCAGCTGTTGCTAACTTGGGTGATCTTAGTCTTGGGAATTGGATTCATGCTCA TATAGACAAGAACAACAAGAAGTTCCAGTTGTCTAATAATGCTCTATCCACAAGCCTCATTGACATGTATGCAAAATGTGGTAATATTGTGGCAGCCAGA CAAATCTTTGATTCCCTGGATTATAAGAACTTGGCTTCTTGGAATGCAATGATATCTGGGTTCGCTATGCACGGACTTGCAGACAAGGCCCTCGAGCTTT TCTCTACAATGACTGACCAAGGTTTCATACCAGATGATATTACCTTCGTTGGTGTATTGTCTGCCTGTAACCATGGTGGTCTAATAGATCTTGCCCGCCA CTACTTTTGTTCAATGGTCAAAGATTATAATGTTTCTCCTAAACTACAACACTATGGTTGCATGATTGATCTTCTAGGCAAAGCAGGGTTGCTCGATGAA GCAGAGAATTTGATTAAGGACATGGAAATGTATCCCGATGGAGCCATCTGGGGTTCTCTACTTGGAGCATGTAGACTTCATGGACGAGTGGAATTAGCTG AATTGGCTGCCAAGCATGTTTTCCAGTTAGAGCCTGAAAATATTGGAGCTTATGTGCTCTTGTCAAACATTTATGCAGGAGCTGGAAGATGGGAGGACGT TGCGAAAATAAGAACAAAGATCAATGATGAAGGAATGAAGAAAGTTCATGGTTGTAGTTCTATTGAGGTGGATAGCGTGGTTCATGAGTTTCTAGTTTGT GACAAAACACATTGTCAGAGTGAGGAAATCTACAAGATGGTGGATGAGATAGATTTGCTCTTGGAGAAATCTGGGTTCGTACCGGATACATCTGAGGTCT TATACGATATGGTCGAGGATTGGAAGCAAGAGGCTTTGAGGCATCACAGTAAGAAGTTAGCTATTGCTTTTGGTTTGATCAGTACAAAGCCAGGAACCAC TATAAGAATAGTGAAGAATCTGCGTGTCTGTGGAAATTGTCATTCTGCAACTAAGCTGATATCAAAGATCTTTAACAGAGAAATCATTGCTAGAGACAGA AATCGTTTCCACCATTTCAAAGACGGACTCTGTTCGTGTAATGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10030053 pacid=23172609 polypeptide=Lus10030053 locus=Lus10030053.g ID=Lus10030053.BGIv1.0 annot-version=v1.0 MAAFSSPPSIAVSTTAISHFLPLSDPPYQLLQNHPSLALLSTCKNHRTFKQIHSLVLRRGLHSTQFSLSKLIEFCAVSPYGDMAYSLSLFESVENPDQII WNHIIRGFALGESPILAVEFYIRMMVSGLEPNTHTFPFVLKSCAKSGNAKEGKQIHGHVLKLGVENDAFVHTSLINMYAQNGELDFARLVFEKSPRRDVI SCTALMNGYCSGGLMEEASKLFDEIPIRDVVSWNAMISGYVHSGLFEEALEFFGEMVRVGITPNSWIEDHGLGSNLRLLNGLVDMYAKCGDLERAKSIFD NIGTKNVVSWNVIIGGYNHKGCYKESLEIFRQMLLSNLEPNEVTLVSVLPAVANLGDLSLGNWIHAHIDKNNKKFQLSNNALSTSLIDMYAKCGNIVAAR QIFDSLDYKNLASWNAMISGFAMHGLADKALELFSTMTDQGFIPDDITFVGVLSACNHGGLIDLARHYFCSMVKDYNVSPKLQHYGCMIDLLGKAGLLDE AENLIKDMEMYPDGAIWGSLLGACRLHGRVELAELAAKHVFQLEPENIGAYVLLSNIYAGAGRWEDVAKIRTKINDEGMKKVHGCSSIEVDSVVHEFLVC DKTHCQSEEIYKMVDEIDLLLEKSGFVPDTSEVLYDMVEDWKQEALRHHSKKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR NRFHHFKDGLCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	0	1
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10014702 [exp]	1.0	0.9383
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	1.7	0.9295
AT3G17930			unknown protein		Lus10042280 [exp]	2.0	0.9373
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	2.0	0.9159
					Lus10023773 [exp]	9.2	0.9096
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	9.8	0.8910
					Lus10042279 [exp]	10.4	0.8893
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	10.7	0.8685
AT2G38570			unknown protein		Lus10022733 [exp]	12.0	0.8693
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	12.2	0.8759

Compare expression of checked genes

Lus10030053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.