Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26695 196 / 7e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 114 / 3e-33 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 108 / 4e-31 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 67 / 4e-14 zinc finger (Ran-binding) family protein (.1) AT1G48570 50 / 6e-08 zinc finger (Ran-binding) family protein (.1) AT1G70650 43 / 2e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G67325 42 / 5e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033023 [exp] 258 / 2e-87 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10019433 [exp] 206 / 2e-68 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 201 / 4e-67 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002032 [exp] 107 / 4e-30 AT3G15680 182 / 3e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002896 [exp] 106 / 5e-30 AT3G15680 181 / 9e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10009049 [exp] 52 / 2e-08 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 51 / 4e-08 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 42 / 7e-05 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 39 / 0.0003 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149900 [exp] 196 / 7e-66 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 184 / 3e-60 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G061300 [exp] 129 / 4e-39 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G172700 [exp] 117 / 1e-34 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 117 / 2e-34 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 112 / 1e-32 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.015G038200 [exp] 62 / 7e-12 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 59 / 5e-11 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 54 / 3e-09 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 44 / 6e-06 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10030054 pacid=23172624 polypeptide=Lus10030054 locus=Lus10030054.g ID=Lus10030054.BGIv1.0 annot-version=v1.0 ATGAGCTGGACAGGAGGTGACTGGATGTGTGCAGCCTGTCAACACCAGAACTTCAAGAAGAGAGAAGCATGTCAAAGATGTGGGTATCCCAAATACGGAG GGCCCGATATTTCGACGTATATGTACAACAAAACAGATGTACTGGCAGGGGATTGGTATTGCATTGCCATGAACTGTGGAGCTCACAACTACGCCAGCCG AACTAGCTGTTACAGATGTGGCTCCGTCTATGCTAATGCTGCTCCGGCTACTCCTGCTTATGGCTCCGATCATTCTCCTCCTGGATGGAAGTCTGGCGAT TGGATATGTGCTAGGATGGATTGTGGAGCACACAATTTTGCTAGCAGGGGAGAATGCTTCAAATGCAGGACACCAAGGGAATATGGTGGTGCAATGTAA
AA sequence Show only first row Show all	>Lus10030054 pacid=23172624 polypeptide=Lus10030054 locus=Lus10030054.g ID=Lus10030054.BGIv1.0 annot-version=v1.0 MSWTGGDWMCAACQHQNFKKREACQRCGYPKYGGPDISTYMYNKTDVLAGDWYCIAMNCGAHNYASRTSCYRCGSVYANAAPATPAYGSDHSPPGWKSGD WICARMDCGAHNFASRGECFKCRTPREYGGAM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10030054 [exp]	0	1
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	3.3	0.8153
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	6.0	0.8023
					Lus10003631 [exp]	6.3	0.7968
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	8.0	0.8042
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	16.1	0.7865
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	17.0	0.6594
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	21.7	0.7738
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	23.2	0.7918
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	26.1	0.7840
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	26.7	0.7421

Compare expression of checked genes

Lus10030054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.