Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010798 [exp] 76 / 1e-15 AT5G27260 61 / 5e-10 unknown protein Lus10004397 [exp] 69 / 2e-13 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 67 / 7e-13 AT5G27260 74 / 1e-14 unknown protein Lus10018174 [exp] 62 / 4e-11 AT5G41980 68 / 1e-12 unknown protein Lus10032816 [exp] 56 / 1e-09 AT2G24960 57 / 1e-09 unknown protein Lus10004902 [exp] 52 / 2e-08 ND 36 / 0.002 Lus10014160 [exp] 53 / 5e-08 ND 47 / 6e-06 Lus10006034 [exp] 51 / 2e-07 AT5G27260 42 / 2e-04 unknown protein Lus10043125 [exp] 46 / 2e-06 AT2G24960 51 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172900 [exp] 44 / 4e-05 AT2G24960 96 / 1e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030055 pacid=23172541 polypeptide=Lus10030055 locus=Lus10030055.g ID=Lus10030055.BGIv1.0 annot-version=v1.0 ATGGACAACCAAGTTGATGATGCCCTTATCGAGTCCCTATTGCAGCTGGTGCAGAATAAGGAGGTTGACTCTAGCAACTTCAGAAATGATGGTTTCAAAA ACCTTGAAGCACTTATGAAAGAAAAAATCTCAGGTTTTACAATGAATGTGTCAAACATAAAGTCAAGACATATGATTTTTAAAAACAAATATATCATTAT CCAGGATATTATCAATGGTGGAGAAAGTGGTTTTGGTTGGGATGAAAGTAAGGAAATTATCAATGATGATGATGATGATGTCTACAAAGATAAGACACAC GCTGGATCTAAAAGACTTAACAAGACTTCATTTTTGTACTTTGACCAATTGGCAAGAATATTTGGAAAGGATAAAGTTGTTGGAAGGAAAGCAGAATTTG CTGCAGATGTACAATTTCAGATTATTGATGCAGATGTTACTAGTGAAAGTGCTAATGGAGAACATTTTGAGAATGTAGATCAACCATTACATGTTGAAAC TTCCCAACAAATTTTAGAGGACATGATCAATCAAGGCATTGATGGAAAGCGCATGACAAATGCTCCCATAAAGCCATTTGCTTCAACCGAAAGCTCAAAG AAACCAAGGAAAGAAGCTAGATCGAGTGCAATGAGTGAGGAGGTTGCTAAGTTGCTTTCTCTATTGGAAAGGACAACATCTAGCATTGAGAAGATCGTGA ACTGCATGTGTCATTAA
AA sequence Show only first row Show all	>Lus10030055 pacid=23172541 polypeptide=Lus10030055 locus=Lus10030055.g ID=Lus10030055.BGIv1.0 annot-version=v1.0 MDNQVDDALIESLLQLVQNKEVDSSNFRNDGFKNLEALMKEKISGFTMNVSNIKSRHMIFKNKYIIIQDIINGGESGFGWDESKEIINDDDDDVYKDKTH AGSKRLNKTSFLYFDQLARIFGKDKVVGRKAEFAADVQFQIIDADVTSESANGEHFENVDQPLHVETSQQILEDMINQGIDGKRMTNAPIKPFASTESSK KPRKEARSSAMSEEVAKLLSLLERTTSSIEKIVNCMCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10030055 [exp]	0	1

Compare expression of checked genes

Lus10030055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.