Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20070 573 / 0 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) AT2G42070 45 / 9e-05 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) AT1G68760 41 / 0.0004 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014493 [exp] 739 / 0 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10029289 [exp] 47 / 3e-05 AT2G42070 355 / 5e-124 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070400 [exp] 584 / 0 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.006G154200 [exp] 575 / 0 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.006G192800 [exp] 52 / 5e-07 AT2G42070 351 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.016G045300 [exp] 47 / 2e-05 AT2G42070 353 / 3e-123 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain CL0261 [flax] [poplar] NUDIX PF09296 [flax] [poplar] NUDIX-like NADH pyrophosphatase-like rudimentary NUDIX domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF09297 [flax] [poplar] zf-NADH-PPase NADH pyrophosphatase zinc ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10030056 pacid=23172546 polypeptide=Lus10030056 locus=Lus10030056.g ID=Lus10030056.BGIv1.0 annot-version=v1.0 ATGAAGGATTCTACATATTTCATCAAAGAAAGGGACAGATGTCGGCAGATCAGCGTTACTGAGTCAACTAAAAGCAGCAACCTTTTCCTTGGTTTTGCCT CCTCCACCACCGTATGCCAAAATTCAGCATCCAATGGATCAACAGCATCCTATTATAAACGAGCCATGCTCCTTTCCTTTTCTTCTTCTTCCCCAAACTT CCTCATTTCCTCTCTCCGTAGTCTAGTTTCATTACCCCTTATACCAGCCATAACCAGAGAAGCTTTCTCCAACTACTACTGTATCACCATGTCGGTCAAC TTAAAAACCCACGCATTCGCTGGAAACCCTCTTAGTTCCGGCAGTCCATTTCCCCCGTCATCAGCTCTTGAAACCCTCAAAAGTCGGCTCCTAGAAAGCA ACAATTCCACCCACCAATTGCTTTCTCCTAGTTTCCAGGTCTTGCCCTTCAGGAAGGGCCGGCCTCTTGCATCTTCCACCGACGAGGTGGACGGCGACAG AGATTCGGCGCCAATTTGGCATCTGGGTTGGATTGGACTTGCTGATTGCAGAGGATTTTTAGCCAAGTCTGGTGTTGAATTGAGTGCTGAGAGCTTAGTT TATCTAGGGTTTAGGAATGAGGAGGATGTAGTTTACTGGGCAATCGATGTTTCTAGTGGAGATAGTCTGGTTACTGAATTTGGTGGCAAGCGGCTCTGCT TTGTGGAGTTGAGGACTCTCATGGTGGCTGCTGATTGGACTGATGAACGAGCCATGGCGGATCTGGCTATTGCTGGTCATGCGCGAGCATTGTTAGAATG GCACAAGAAAAGTCGGTATTGTGGATCCTGTGGAGCAAATACGATCCCTATAGAAGGTGGCAGAAGGAAACAATGCTTGAATGAGATATGCAAATCCAGG GTCTATCCTCGTATTGATCCAGCACAGCTTTTGTCATCTCATATTCATATGCCGCAGGTTGTCATCATGTTGGTTATTGACAAAGAGAACGATAGAGTCC TTTTAAGCAGACAGTCGAGATTTGTACCACGAATGTGGAGTTGCCTAGCTGGATTTATAGAGCCTGGAGAAAGCTTAGAAGAGGCAGTGAGGAGAGAAAC TTTTGAAGAGACTGGTATTGAAGTAGAAAAAGTTGTCTATCATAGTTCTCAGCCATGGCCTGTCGGCCCCAGCAGCATGCCATGCCAGCTGATGGTAGGT TTCTTTGCCTATGCAAAGACACTGGAAATAAATGTGGACAAAACAGAGTTAGAAGATGCTAAATGGCACAGTCGAGAAGATGTCCAGAAAGCACTGTCGG TAGCAGAGTACAAGAAAGCACAAAAAACAGCAGCCACCAAGGTGGAACAGATGTGCAAGGGAGTTGAGAAAGGTCAGAGTCTGTCTGCAGATTTTAATGT GGAAAGTGGCGAACTTGCTCCGATGTTTTTCCCCGGCCCTTTCGCGATTGCTCATCACCTCATTTCGTCATGGGTTAACGGAGAAACCACGATTAGTAAT GGACTTCAAGGCAAGCAAATTGGTTCTTCCATGTCAAATCTATAG
AA sequence Show only first row Show all	>Lus10030056 pacid=23172546 polypeptide=Lus10030056 locus=Lus10030056.g ID=Lus10030056.BGIv1.0 annot-version=v1.0 MKDSTYFIKERDRCRQISVTESTKSSNLFLGFASSTTVCQNSASNGSTASYYKRAMLLSFSSSSPNFLISSLRSLVSLPLIPAITREAFSNYYCITMSVN LKTHAFAGNPLSSGSPFPPSSALETLKSRLLESNNSTHQLLSPSFQVLPFRKGRPLASSTDEVDGDRDSAPIWHLGWIGLADCRGFLAKSGVELSAESLV YLGFRNEEDVVYWAIDVSSGDSLVTEFGGKRLCFVELRTLMVAADWTDERAMADLAIAGHARALLEWHKKSRYCGSCGANTIPIEGGRRKQCLNEICKSR VYPRIDPAQLLSSHIHMPQVVIMLVIDKENDRVLLSRQSRFVPRMWSCLAGFIEPGESLEEAVRRETFEETGIEVEKVVYHSSQPWPVGPSSMPCQLMVG FFAYAKTLEINVDKTELEDAKWHSREDVQKALSVAEYKKAQKTAATKVEQMCKGVEKGQSLSADFNVESGELAPMFFPGPFAIAHHLISSWVNGETTISN GLQGKQIGSSMSNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	3.0	0.8395
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	3.6	0.8116
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	5.1	0.8624
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	6.7	0.8203
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	10.2	0.8016
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	12.0	0.7815
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	13.0	0.8417
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	18.0	0.8337
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	21.2	0.8383
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10041739 [exp]	30.3	0.8260

Compare expression of checked genes

Lus10030056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.