Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15410 276 / 2e-91 aspartate-glutamate racemase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014492 [exp] 526 / 0 AT1G15410 274 / 6e-91 aspartate-glutamate racemase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061800 [exp] 281 / 1e-90 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0399 [flax] [poplar] Asp-glut_race PF01177 [flax] [poplar] Asp_Glu_race Asp/Glu/Hydantoin racemase
Representative CDS sequence Show only first row Show all	>Lus10030057 pacid=23172552 polypeptide=Lus10030057 locus=Lus10030057.g ID=Lus10030057.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCAAAGTTTGCAGCCATTGGGGATTGGACAGCGCTTCACTCTGTCCTTGTTGCTAATGATCTCAAATCTCTGTCCTTTCAGAGGCTGGAAG ATATTCAATATGCCAATCCTAGACTAACAGCTGGTTGTGGAACTAGATTCTTGTCTTTACATCAGGATATGGAAACTTGCAAAAGTGCACTTCTTTCAAG ATCAAGAGGATCATCATCATCATCGAGAAGGAATCACAAACTCCACTTACCGATGAGTCACCGGGGGAACACTGTGGGGATCATTGCAGGAGTTTCGGTC TTGTCTACTCTTACTTTCCTGGAAAAGCTAATCTTGTGGAGCTTCAAAGAATCTCAACACTGCCCACCCTTCATTCTCACCAACCATCCTACTACAGTCA CCGCCAGCCTAATGTTCATCCACCGCTCATTCTGTAGCAAAAAAGATGTTAAATCAATCAGGCCCAACCTCAATCAGATTATCGACAATTTACGCGGAAA GAGGATGTTCCTGGAGCAGTCTGGAGTTCGCTGCCTCGTTATGCCGTGTCACGTATCACATCAATGGTGTAGTGAAATATACAGAGGAAGTCTTTTGCCT TCCTTTCACTTAGGCGACTGTGTTGTTAGTGAGCTCAAGGATGCGAATCTGAAGCCAATGGTTTGTGGAAACAGTATCAGGATTGGTGTTCTTGCCACTA ATCCAATTCTGCAGGCTGGTTTTTACCAGGAGAGATTACAGAGCCAGGGGTTTGAGGTGGTGGTGCCAGATAAAGGAACGGTGGATCACATTCTGATCCC AGGAATTGAAGCTCTGGGCAAAGGGGACATGGAAGGAGCTCAAGTCCTTGTAAGAATAGCAATTCAGCTTCTTCTTGTGAAGGGAGTTAACATTGTAATC CTTGCTTCTGATGAGATTCAGGGACTTCTTCCCAACGACGATCCTCTTCTGAAGAAATGCATTGATCCCATTGATGCCTTGGCAAAGTCAGTAGTAAGGT GGGCTAAATGGAGAGGGAAAGATTCAGAGGAATGCATAAACAGGACCATATGA
AA sequence Show only first row Show all	>Lus10030057 pacid=23172552 polypeptide=Lus10030057 locus=Lus10030057.g ID=Lus10030057.BGIv1.0 annot-version=v1.0 MGRAKFAAIGDWTALHSVLVANDLKSLSFQRLEDIQYANPRLTAGCGTRFLSLHQDMETCKSALLSRSRGSSSSSRRNHKLHLPMSHRGNTVGIIAGVSV LSTLTFLEKLILWSFKESQHCPPFILTNHPTTVTASLMFIHRSFCSKKDVKSIRPNLNQIIDNLRGKRMFLEQSGVRCLVMPCHVSHQWCSEIYRGSLLP SFHLGDCVVSELKDANLKPMVCGNSIRIGVLATNPILQAGFYQERLQSQGFEVVVPDKGTVDHILIPGIEALGKGDMEGAQVLVRIAIQLLLVKGVNIVI LASDEIQGLLPNDDPLLKKCIDPIDALAKSVVRWAKWRGKDSEECINRTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	1.7	0.7767
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	4.7	0.7737
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	9.6	0.7677
					Lus10017946 [exp]	14.0	0.6897
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	14.3	0.6938
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	21.0	0.7304
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	24.5	0.6921
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	26.8	0.6985
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	29.7	0.6887
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	32.4	0.7095

Compare expression of checked genes

Lus10030057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.