Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20080 511 / 0 FAD/NAD(P)-binding oxidoreductase (.1) AT5G17770 205 / 2e-64 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT1G37130 141 / 5e-37 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 140 / 6e-37 GNR1, NIA1 nitrate reductase 1 (.1) AT1G20020 48 / 6e-06 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G15140 47 / 7e-06 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014491 [exp] 550 / 0 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10026774 [exp] 216 / 9e-69 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 210 / 2e-66 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 210 / 3e-66 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 208 / 2e-65 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 196 / 7e-61 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 157 / 1e-45 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10035402 [exp] 147 / 4e-39 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 146 / 1e-38 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218600 [exp] 501 / 2e-180 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.004G194400 [exp] 211 / 6e-67 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 209 / 3e-66 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 209 / 5e-66 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 205 / 1e-64 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.005G172400 [exp] 169 / 6e-47 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 162 / 3e-44 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.010G116500 [exp] 45 / 4e-05 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030059 pacid=23172542 polypeptide=Lus10030059 locus=Lus10030059.g ID=Lus10030059.BGIv1.0 annot-version=v1.0 ATGGCGTCCACGTTCTTCAGGCGACTTGCCAGAGCCGCGACCCCTTCTGCGTCTTCCGGAGGAAATGGAGGTTATTCATCCGGATCAAATTACAGTGGCT TCCGCTTTCCCTTTGGAGCGGTTGCCGCAGTTTCCGCCGGAATCTCTTATGTCTACTGTTGTTCCTCTCCTCATCTGGTTCACTTGGATGGAGCAAAAGA AGAGGTTGGTCCCAAAGTTGCTCTTAATCCTAATAAGTGGATCGAGTTCAAGCTTCAAGACACTGCAATTGTTAGTCACAATACTCAACTGTTCAGGTTT TCGTTTGATCCTTCTTCCAAGCTCGGTTTGGACATCGCATCTTGTCTCCTTACTAGGTATCCGCTAGAAACAACTGCCGAAGGGAAAACTAAATATGTAA TACGCCCATATACTCCAATTTCAGATCCAGAAGCAAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGACGGAAAAATGAGTCAGCATTTGGCTAG TTTGAAGCCTGGTGATGTCGTCGAGGTTAAAGGGCCAATTCAGAAAATCAGATACTCTCCCAATATGAAGAAGCACATCGGCATGATTGCTGGTGGCAGT GGCATTACGCCAATGCTACAAGTAATTGAGGCTATCCTAAAGAATCCAGATGACAACACCCAGGTGTCATTGCTTTATGCCAATGTCTCCCCTGATGACA TACTGCTTAAGCAAAAACTCGACTACCTAGCTACTAGGCACCCAAATTTGAAGGTTTTCTACACTGTAGACAATCCAACAAAGACATGGAAAGGAGGCGT GGGCTACATATCAAAAGAGATGGCTCTTAAAGGCCTGCCTGTTCCTGGAGATGACACAATCATAATGGTATGCGGACCGCCTGGAATGATGAAGCACATA TCAGGGGAAAAGGTTAAAGCGGAACAAGGAGAGCTGAGTGGCATCCTAAAAGAACTAGGATACACAGAAGAAATGGTTTACAAGTTCTAG
AA sequence Show only first row Show all	>Lus10030059 pacid=23172542 polypeptide=Lus10030059 locus=Lus10030059.g ID=Lus10030059.BGIv1.0 annot-version=v1.0 MASTFFRRLARAATPSASSGGNGGYSSGSNYSGFRFPFGAVAAVSAGISYVYCCSSPHLVHLDGAKEEVGPKVALNPNKWIEFKLQDTAIVSHNTQLFRF SFDPSSKLGLDIASCLLTRYPLETTAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHLASLKPGDVVEVKGPIQKIRYSPNMKKHIGMIAGGS GITPMLQVIEAILKNPDDNTQVSLLYANVSPDDILLKQKLDYLATRHPNLKVFYTVDNPTKTWKGGVGYISKEMALKGLPVPGDDTIIMVCGPPGMMKHI SGEKVKAEQGELSGILKELGYTEEMVYKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	0	1
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10014584 [exp]	7.7	0.9069
AT3G60480			unknown protein		Lus10000560 [exp]	7.9	0.8774
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	11.6	0.9093
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	13.6	0.8719
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	13.9	0.8998
AT2G20820			unknown protein		Lus10038583 [exp]	14.4	0.8460
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	18.4	0.8865
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	19.1	0.9090
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	19.7	0.8770
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	20.0	0.9047

Compare expression of checked genes

Lus10030059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.