Plant FIBer expression Database

Lus10030060 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10030060 pacid=23172585 polypeptide=Lus10030060 locus=Lus10030060.g ID=Lus10030060.BGIv1.0 annot-version=v1.0
ATGATAGAAGAACCACCGCCGATCGCCGATCGACTCTCCCTCCTAGCTTACAGCGACAAACGCGGCCTTCCGAAGCTAAACCGTGATGATTTCAGTCACC
TGCATCCCACCGCCCGTCCTAAGCTCACCTCCGATTTCAAACGTCCGGGGTTGTGTAGCAAAGGTGATGGATGCTCCTTCTCTCATGACACTACTCGCAA
AACACCTGCACCACCATCCCATGATATGACTTATACTCGTGTTGATGCTGCTACAATTCATTTTGGTACACCATTGCCTCCTAATAGTAGATGCGAAAAG
GGATCTCCCAATGAAGCTGGAGGAGACAATGTGGAGCAATGTAGAGATGATCAAGGTACGGGAGATGATGTGCTTGACCTTGACCTTCATCAACACCATA
ATTGTTTGCAGAATGCATCTATATGTATCGATGGCAATGCAGCAGGTATTTTAGGCTGTGATAAGAAGAAAGTAGAAGGTCCTGCATTAGGTAATCACAT
TAAAGTTGAGGCCGGTGATGGCCAGGGGATACGAGAAGCTGGTGTGCTTGCTTCTGAAATGCATCAACATCAACAAAACGAGTCAGAGAATCGAGATGAG
GAACGTATTGACCTGGTCAATTTTGTTAATCTTATGAATAACAATGCAGCAGGGAGGGTTTCAGGCTGTGATAAGAAGGAAGTGGACAGTTGTTCGTTAG
GCTATAACATCAAAGTTGAGGCTTGCTCATCTGGGCAGGCGTTACGAGAAGGTGAACTCCCACGTATAAGTGTGAAGGAGCATCTGTTATATGTTGATGG
TAGTGTGATGAAGTCCAGGATCTCAAGTTTGAAGGACCGTCTGTTATATGCTAATTCCAACAATGCATTTGTAAGGGCAGTGGACCTTCGAGAACACTTG
AAGAAACGAAAGGCGATGAATGGTAATCGAGATGCTGATTCATTTAGACAAAAGAAAAGACCAGCACCGCCTAGAGGGAATGAGGGCCAGTTTAGGAACT
GGACAAGGGTTACCAAAGATACGCTCGATGTCGCACCTGAAGAGCCATTAAGAGAGGATTTGGGATCGGGTATTGATTTTAAAGGACCAAAGAGCCTTGC
TCAGATTAAGGAAGAGAAGAGAATGTCAGAAGAGCTCAGGGGTAAAAAGTAG
AA sequence
>Lus10030060 pacid=23172585 polypeptide=Lus10030060 locus=Lus10030060.g ID=Lus10030060.BGIv1.0 annot-version=v1.0
MIEEPPPIADRLSLLAYSDKRGLPKLNRDDFSHLHPTARPKLTSDFKRPGLCSKGDGCSFSHDTTRKTPAPPSHDMTYTRVDAATIHFGTPLPPNSRCEK
GSPNEAGGDNVEQCRDDQGTGDDVLDLDLHQHHNCLQNASICIDGNAAGILGCDKKKVEGPALGNHIKVEAGDGQGIREAGVLASEMHQHQQNESENRDE
ERIDLVNFVNLMNNNAAGRVSGCDKKEVDSCSLGYNIKVEACSSGQALREGELPRISVKEHLLYVDGSVMKSRISSLKDRLLYANSNNAFVRAVDLREHL
KKRKAMNGNRDADSFRQKKRPAPPRGNEGQFRNWTRVTKDTLDVAPEEPLREDLGSGIDFKGPKSLAQIKEEKRMSEELRGKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030060
[exp]
0 1
AT1G72510 Protein of unknown function (D... Lus10037683
[exp]
28.3 0.7571
AT1G17030 unknown protein Lus10024442
[exp]
31.2 0.7467
AT5G05080 ATUBC22, UBC22 ubiquitin-conjugating enzyme 2... Lus10010433
[exp]
33.3 0.7553
AT1G11050 Protein kinase superfamily pro... Lus10018860
[exp]
36.9 0.7451
AT5G42770 Maf-like protein (.1.2) Lus10002531
[exp]
53.4 0.7095
AT2G17020 F-box/RNI-like superfamily pro... Lus10022652
[exp]
57.5 0.7250
AT1G66150 TMK1 transmembrane kinase 1 (.1) Lus10034432
[exp]
90.9 0.6508
AT1G02160 Cox19 family protein (CHCH mot... Lus10024637
[exp]
92.8 0.7092
AT2G24990 Serine/threonine-protein kinas... Lus10032627
[exp]
115.4 0.7025
AT1G52280 AtRABG3d RAB GTPase homolog G3D (.1) Lus10025790
[exp]
121.5 0.6540

Lus10030060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.