Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02160 117 / 2e-27 C3HZnF CCCH-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014490 [exp] 748 / 0 AT2G02160 174 / 3e-47 CCCH-type zinc finger family protein (.1) Lus10043286 [exp] 399 / 6e-133 AT2G02160 171 / 2e-46 CCCH-type zinc finger family protein (.1) Lus10019430 [exp] 367 / 1e-120 AT2G02160 173 / 4e-47 CCCH-type zinc finger family protein (.1) Lus10022109 [exp] 86 / 1e-19 ND / Lus10005558 [exp] 50 / 4e-06 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098200 [exp] 130 / 1e-31 AT2G02160 349 / 3e-110 CCCH-type zinc finger family protein (.1) Potri.008G144200 [exp] 127 / 1e-30 AT2G02160 383 / 4e-123 CCCH-type zinc finger family protein (.1) Potri.001G383800 [exp] 59 / 1e-08 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 57 / 3e-08 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G071450 [exp] 44 / 0.0001 ND / Potri.017G018600 [exp] 45 / 0.0002 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G077700 [exp] 43 / 0.0007 AT1G21580 608 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF02892 [flax] [poplar] zf-BED BED zinc finger CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10030063 pacid=23172616 polypeptide=Lus10030063 locus=Lus10030063.g ID=Lus10030063.BGIv1.0 annot-version=v1.0 ATGTCATCCCAAGGAGTTCATGGAGATGATCAACATAATAGCAGTACTGCCTCTACAGCTGCTGTTGGAAATGGAGCGGTTGTACATGCAACCGATGTTC ATCTGCAGAATCCAGATGCTGTTGCTGGGAATCGTGCTGTTGAGGAGGTAATCAATGTTGGTGGGCTTAAAAGTCCTGTTTGGTCACACTATTCCAAAAT TCGGATTAATGGTGTTGTTAAGGCTAAATGCAACTATTGCAGGAAGTTTTTAGTTGGGGATTCAAACAGTGGTACAACTCATCTAAAGAATCATACTAGA ATCTGTGTTCCTAAAAAAATTAGAGATGGTAGTCAAAAGATTCTTGGAACTCACTATTCGGCTAAAAGGAAGCAAGATTTGATGGTTGGTGGTAATGCTT TCAACTTAGATTTTTCGAAAAGGGAATTTGCAGGAGCCGAGTGTGAGTACCGGCACAGCGATATGGCAAGGCTAAATCCGAGGGATTGCTGGTACTGGTT GTCTGGATCCTGTCTTAATCCAACCTGCGCCTTCAGACATCCTCCTCTTGAAAATCCAACTGAAGTTCCTTCAGAATCTGGCTTAGGGCCTAGTCAGGCT AACCAGTCTACAAACAAGAATGCTGTCCCATGCTATTTCTACTTACAAGGTTTCTGCAGCAAAGGCGACACGTGCACCTTTTTGCATGCTCCTCATGGCA GCACGTCTACTGCAAAATCTGTTAAAATGCCTTCTACAAATTCAGATGGTCATCCAGTGAACAGTAGTCAAGCATCAGGAAGTAAAACTGCACTTGCACC AACCAAGGTGCAAAATAATCTGCATGAAACAGCTCAGAAGCCATCAATGGATATGAAGTTGCAATCTAAGGAGGAAATGCAGCAGCTAGCCCCTGATGTG GAAGTTCAAAAGAGTTCCCCATTGCAGATTGCTGTGACCAATGATGAGGAAGCTCGTGTTTATGAGACTGATACCTTGTTGCCACCAGAGAGTTATAAGG AGGATATATCGTACATGCGTTCTGATTTGAATTCAGAAGACTATGCTGATGACCACATAGAGCAAGAGCCATGGGAATCATCACCGGGTTTTGATGTTCT TGTGGATAATGAAGAGGAGGAGAATCTATGCTACGAGGATGAGCAAGATTATGTGGTGTCCCTTGATAGAGAACAGAGGGTTGTGGATAATCAATTTGTC GAGTATAATTTTGAAGAGCCAGATGAGTACGTACGTTTGGGATTCAGTCAGAGGAGAGAACTAGATCTCCGAGACCACCTGAGGAAACGTAGGGCTGTTG ATGGCGAGCAGTTCAGTAGTAGATCAGTGAGAAGGCGAGAGTCATCCCTTCTATATGAGCCATACCATCTAAGCAGGGGGAGCCATGACAGGCGATATGA GCATGGACTGAATGAACAGAACAGGCGGAGCCATGAGAGACCATATAAGCATGGATTAAGTAGACGAATCAGGGAGAACCATATCAGACAATACGAGCAT GGACTAAGTGAACGGCTACGTGGAAGATTAGTATGTGATATTGGGAGGACTGGCATTGAATTCGTTAATGGTTATGGAATTCGTGGGAATTGTGCAAGTG AGCGTGGCTGGATGAAGCATTTGCAGTTCCACAGGCCTATGATACACGGGGAATGTTACGTTCCATATGATTTTGGGTGGAGACCGGTTGGTAGAGAAAG GAGGTCAAGTGAGAAAGGGCGTGGTGAATTTTCCAGACAAAATGGGTATTCAATTGAGAGAGATGGGGATATGACTGGAACTGAGTCGGCAGCAACAAAT TTCGAGGGCCCGAAACCTTTAAACGAAATCCTCAAGGAGAAAAAGAAGCTTGTGGAAGTATGA
AA sequence Show only first row Show all	>Lus10030063 pacid=23172616 polypeptide=Lus10030063 locus=Lus10030063.g ID=Lus10030063.BGIv1.0 annot-version=v1.0 MSSQGVHGDDQHNSSTASTAAVGNGAVVHATDVHLQNPDAVAGNRAVEEVINVGGLKSPVWSHYSKIRINGVVKAKCNYCRKFLVGDSNSGTTHLKNHTR ICVPKKIRDGSQKILGTHYSAKRKQDLMVGGNAFNLDFSKREFAGAECEYRHSDMARLNPRDCWYWLSGSCLNPTCAFRHPPLENPTEVPSESGLGPSQA NQSTNKNAVPCYFYLQGFCSKGDTCTFLHAPHGSTSTAKSVKMPSTNSDGHPVNSSQASGSKTALAPTKVQNNLHETAQKPSMDMKLQSKEEMQQLAPDV EVQKSSPLQIAVTNDEEARVYETDTLLPPESYKEDISYMRSDLNSEDYADDHIEQEPWESSPGFDVLVDNEEEENLCYEDEQDYVVSLDREQRVVDNQFV EYNFEEPDEYVRLGFSQRRELDLRDHLRKRRAVDGEQFSSRSVRRRESSLLYEPYHLSRGSHDRRYEHGLNEQNRRSHERPYKHGLSRRIRENHIRQYEH GLSERLRGRLVCDIGRTGIEFVNGYGIRGNCASERGWMKHLQFHRPMIHGECYVPYDFGWRPVGRERRSSEKGRGEFSRQNGYSIERDGDMTGTESAATN FEGPKPLNEILKEKKKLVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10030063 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	10.2	0.9242
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	15.6	0.9142
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	19.8	0.9155
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	22.1	0.9132
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	24.0	0.9118
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	25.0	0.9113
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	30.5	0.9000
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	30.6	0.8987
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	31.8	0.8967
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	34.2	0.9062

Compare expression of checked genes

Lus10030063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.